1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACTTAAACCAGGAGAGAACCCTAGGCCTAGGCCTAAAGATCGCCAAATGATTCAAGATCGTGTGAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAAgtatgtagcctttcttgtgctttcctatatctcagtcctgaacatatatttcacattgggatactgactttattttctttaatctcttattacaattcaacag
species | Glycine max |
transcript | GLYMA12G09990.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCAAGATCGTGTGAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAA TGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGEST: gi|19935121|gb|BQ080151.1|BQ080151
genomic: TTCAAGATCGTGTGAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAAgtatgtagcc ... aattcaacagTGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTG
EST: TTCAAGATCGTGTGAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAA TGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGEST: gi|15661769|gb|BI699140.1|BI699140
genomic: TTCAAGATCGTGTGAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAAgtatgtagcc ... aattcaacagTGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTG
EST: TTCAAGATCGTGTGAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAA TGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGEST: gi|193482644|gb|FK443991.1|FK443991
genomic: TTCAAGATCGTGTGAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAAgtatgtagcc ... aattcaacagTGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTG
EST: TTCAAGATCGTGTGAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAA TGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGEST: gi|21677028|gb|BQ629379.1|BQ629379
genomic: TTCAAGATCGTGTGAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAAgtatgtagcc ... aattcaacagTGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTG
EST: GTTGCGGGAAATTGTGCCAAATGGAGCAAAA TGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTG
genomic: GTTGCGGGAAATTGTGCCAAATGGAGCAAAAgtatgtagcc ... aattcaacagTGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTAAACCAGGAGAGAACCCTAGGCCTAGGCCTAAAGATCGCCAAATGATTCAAGATCGTGTGAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAAgtatgtagcctttcttgtgctttcctatatctcagtcctgaacatatatttcacattgggatactgactttattttctttaatctcttattacaattcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA