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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCTTAAAGAAAAAACAGAGGAAATTGAAAGTCCTTCACAGCCATCTTCACCTGAGGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAGgtgcccatttctttttttctcgtctatgtttggcttaactagagaataaggttgttcaaagattccgattttataaatcaaaggtttcttgcttttgggg...

Basic information

species Glycine max
transcript GLYMA12G09850.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209729041|gb|BW651779.1|BW651779
EST:     GGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAG                         ATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTCAACAGAAATCAAAG
genomic: GGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAGgtgcccattt ... tcttttgcagATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTCAACAGAAATCAAAG
EST: gi|22933739|gb|BU550878.1|BU550878
EST:     CACCTGAGGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAG                         ATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTCAACAGAAATCAAAG
genomic: CACCTGAGGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAGgtgcccattt ... tcttttgcagATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTCAACAGAAATCAAAG
EST: gi|16106290|gb|BI894030.1|BI894030
EST:     CACCTGAGGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAG                         ATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTCAACAGAAATCAAAG
genomic: CACCTGAGGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAGgtgcccattt ... tcttttgcagATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTCAACAGAAATCAAAG
EST: gi|42723090|gb|CK768989.1|CK768989
EST:     CACCTGAGGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAG                         ATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTCAACAGAAATCAAAG
genomic: CACCTGAGGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAGgtgcccattt ... tcttttgcagATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTCAACAGAAATCAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCTCTTAAAGAAAAAACAGAGGAAATTGAAAGTCCTTCACAGCCATCTTCACCTGAGGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAGgtgcccatttctttttttctcgtctatgtttggcttaactagagaataaggttgttcaaagattccgattttataaatcaaaggtttcttgcttttgggg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG