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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTACGTGCTGTGTCAGGTATTCTTAGCTTAGCAGCGAGCTTATCCAGTAGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaaagcccagtaattggttctaatttttcagaaaattaaacttgcaaaaaaaaaaaaattgtaaactttaggttatgtataaactaattttta...

Basic information

species Glycine max
transcript GLYMA12G09810.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19453003|gb|BM954413.1|BM954413
EST:     GTTCCATTGGCCTCCGCTGCTGCTCTTGCAAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: GTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|4296796|gb|AI442526.1|AI442526
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|254345814|gb|GR859461.1|GR859461
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|4284295|gb|AI440763.1|AI440763
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|37996972|gb|CF808561.1|CF808561
EST:     TTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: TTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|19936258|gb|BQ080788.1|BQ080788
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|6666779|gb|AW278238.1|AW278238
EST:     GTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: GTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|7686560|gb|AW757208.1|AW757208
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|151401224|gb|EV271038.1|EV271038
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|16105003|gb|BI892743.1|BI892743
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|4395697|gb|AI494694.1|AI494694
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|4313274|gb|AI460393.1|AI460393
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|21678144|gb|BQ630495.1|BQ630495
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|5605973|gb|AI900071.1|AI900071
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|4292133|gb|AI441861.1|AI441861
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|15663843|gb|BI701214.1|BI701214
EST:     GCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: GCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|4396901|gb|AI495898.1|AI495898
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|254337490|gb|GR845167.1|GR845167
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|192295260|gb|FG986979.1|FG986979
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|7925841|gb|AW831867.1|AW831867
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|192325687|gb|FK015044.1|FK015044
EST:     GATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGG--TAGGTGA
genomic: GATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|21888279|gb|BQ741492.1|BQ741492
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
EST: gi|7691239|gb|AW759370.1|AW759370
EST:     AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAG                         GCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA
genomic: AGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaa ... tgaaaaacagGCTAGAAGGGAAGGTGGCACTGATAACTGGTGGAGCAAGTGGTATAGGTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTACGTGCTGTGTCAGGTATTCTTAGCTTAGCAGCGAGCTTATCCAGTAGACTGATGGGAAGTGTTCCATTGGCCTCCGCTGCTGCTCTTGCCAGAAGgtaaatccaaagcccagtaattggttctaatttttcagaaaattaaacttgcaaaaaaaaaaaaattgtaaactttaggttatgtataaactaattttta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaat