Sequence
atgc intronic sequence ATGC exonic sequenceAGCACTTCCAAGTCGAAAGTCAGCATCATATATACCTTACTTCTCCATCCGAAAACTCAGACATGGCAAGTGTCTCACTGGTCTCAGCTACTGGAAGAAGgtaaaggaagttgcaacttaacctctttttacacatacacagtgcaacaatttatttaaatttatcttaattatacataaatatttggatgagtattaat...
Basic information
species | Glycine max |
transcript | GLYMA12G09780.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16346036|gb|BI971631.1|BI971631EST: GAAAACTCAGACATGGCAAGTGTCTCACTGGTCTCAGCTACTGGAAGAAG GCTTGAGGGGAAAGTGGCTATTATCACTGGTGGTGCAAGCGGCATAGGTGA
genomic: GAAAACTCAGACATGGCAAGTGTCTCACTGGTCTCAGCTACTGGAAGAAGgtaaaggaag ... tgccatgtagGCTTGAGGGGAAAGTGGCTATTATCACTGGTGGTGCAAGCGGCATAGGTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCACTTCCAAGTCGAAAGTCAGCATCATATATACCTTACTTCTCCATCCGAAAACTCAGACATGGCAAGTGTCTCACTGGTCTCAGCTACTGGAAGAAGgtaaaggaagttgcaacttaacctctttttacacatacacagtgcaacaatttatttaaatttatcttaattatacataaatatttggatgagtattaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG