1 5' 3' | 2 5' 3' | 3 5' 3' |
CCTCAAGGGAAGGTCTTAACTCTTAAGCGCCTCAAGAACAAACACGACTCACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTGgtaatttattcctattcttattattttcgatagaaactttttcaaataatatttggatcggattttgtagctctctcgaatctgtgtctaagaactttgt...
species | Glycine max |
transcript | GLYMA12G09600.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGANCTGAGNNTG AAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTEST: gi|16346323|gb|BI971918.1|BI971918
genomic: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTGgtaatttatt ... ttatttacagAAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGT
EST: CCCTCTCTGGGCTCTCCACTGAACTGAGTCTG AAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTEST: gi|151398999|gb|EV268870.1|EV268870
genomic: CCCTCTCTGGGCTCTCCACTGAACTGAGTCTGgtaatttatt ... ttatttacagAAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGT
EST: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTG AAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTEST: gi|105632335|gb|DW246419.1|DW246419
genomic: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTGgtaatttatt ... ttatttacagAAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGT
EST: TCTGGGCTCTCCACGGAACTGAGTCTG AAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGEST: gi|192326512|gb|FK018819.1|FK018819
genomic: TCTGGGCTCTCCACTGAACTGAGTCTGgtaatttatt ... ttatttacagAAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGG
EST: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTG AAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTEST: gi|5126760|gb|AI748496.1|AI748496
genomic: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTGgtaatttatt ... ttatttacagAAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGT
EST: CTCCACTGAACTGAGTCTG AAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTEST: gi|10253437|gb|BE821203.1|BE821203
genomic: CTCCACTGAACTGAGTCTGgtaatttatt ... ttatttacagAAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGT
EST: CTCCACTGAACTGAGNCTG AAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTEST: gi|192301404|gb|FG998396.1|FG998396
genomic: CTCCACTGAACTGAGTCTGgtaatttatt ... ttatttacagAAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGT
EST: ACACATTGCTTCTGCTAACCCTCTCTGGGTTCTCCACTGAACTGAGTCTG AAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTEST: gi|151411066|gb|EV280877.1|EV280877
genomic: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTGgtaatttatt ... ttatttacagAAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGT
EST: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACCGAGTCTG AAGAGGGAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTEST: gi|151411525|gb|EV281336.1|EV281336
genomic: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTGgtaatttatt ... ttatttacagAAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGT
EST: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTG AAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGTEST: gi|151412650|gb|EV282462.1|EV282462
genomic: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTGgtaatttatt ... ttatttacagAAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGT
EST: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCT- --GAGGAAAACATTTAACTAACTGCAATAGCTGCACGTGTGGCTGCAAGGTEST: gi|33390403|gb|CA853598.1|CA853598
genomic: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTGgtaatttatt ... ttatttacagAAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGT
EST: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTG AAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGT
genomic: ACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTGgtaatttatt ... ttatttacagAAGAGGAAAACATTTAACTAACTGCAATGGCTGCACGTGTGGCTGCAAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCAAGGGAAGGTCTTAACTCTTAAGCGCCTCAAGAACAAACACGACTCACACATTGCTTCTGCTAACCCTCTCTGGGCTCTCCACTGAACTGAGTCTGgtaatttattcctattcttattattttcgatagaaactttttcaaataatatttggatcggattttgtagctctctcgaatctgtgtctaagaactttgt
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