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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAACGTGAAGTGGAACGACGTCGCGGGGCTTGAGAGCGCCAAGCAGGCTTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattttgacttttcagttttttttttgtttgaacgattgaaggaactttgatgttgaacatttgaaatttaaattgttcgaatggaatggtttcag

Basic information

species Glycine max
transcript GLYMA12G09300.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09300.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g04814.3 (Oryza sativa), 5'ss of exon 1
CCCAACGTGAAGTGGAACGACGTCGCGGGGCTTGAGAGCGCCAAGCAGGCTTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggatttt------gacttttcagttttttttttgtttgaacgattgaaggaactttgatg-ttgaacatttgaaatttaaattgttcgaatggaatggtttcag
|||||| | ||||||||||| ||||| || || |||||||||||||| ||  ||||||| || || || ||||| || ||||| ||||||||||| || ||||||    |       |  |   |||| | ||||   | |    | |  |  |||    | || ||| | | |||    |  |   | ||| || |           
CCCAACATCAAGTGGAACGATGTCGCCGGCCTCGAGAGCGCCAAGCAAGCGCTGCAGGAGGCCGTCATATTGCCTGTCAAGTTCCCGCAGTTCTTTACGGgtgagcggctgctgcgaggataaccagtatattttcattctccttgttgtagagaatagaggtgattgcaaaattggtggtggatccgatcgtataggcc--------

upper sequence: GLYMA12G09300.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G088834_T01 (Zea mays), 5'ss of exon 1
CCCAACGTGAAGTGGAACGACGTCGCGGGGCTTGAGAGCGCCAAGCAGGCTTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattttgacttttcagttttttttttgtttgaacgattgaaggaactttgatgttgaacatttga-aatttaaattgttcgaatggaatggtttcag--
|||||| | |||||||||||||| || || || |||||||||||||||||  ||||||| || ||||| |||||||| ||||| |||||||||||||| ||||||       || |   ||  || | |||         ||| |||      |  || | ||  ||||   ||| |||||| |   ||||  |      ||  
CCCAACATTAAGTGGAACGACGTTGCCGGCCTCGAGAGCGCCAAGCAGGCACTGCAGGAGGCCGTTATATTGCCCGTCAAGTTCCCGCAGTTCTTCACGGgtgagcgacggtacctaaaagcgttatcttttccccctttatt-aagctttgatcctgataaaagtttggcgattgaaattgat---atggggtcacaaaaggc

upper sequence: GLYMA12G09300.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G126860_T01 (Zea mays), 5'ss of exon 1
CCCAACGTGAAGTGGAACGACGTCGCGGGGCTTGAGAGCGCCAAGCAGGCTTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattttgacttttcagttttttttttgtttgaacgattgaaggaactttgatgttgaacatttgaaatttaaattgttcgaatggaatggtttcag--------
|||||||| |||||||||||||| || || || |||||||||||||| ||| ||||||| || || || ||||| || ||||| || ||||||||||| ||||||   |  |  || ||  |||||||||  ||| |    ||||        ||||    ||  || |  |||  ||| |||    ||   || | |  |        
CCCAACGTCAAGTGGAACGACGTTGCTGGCCTCGAGAGCGCCAAGCAAGCTCTGCAGGAGGCCGTCATATTGCCGGTCAAGTTCCCACAGTTCTTCACGGgtgag--ctacgggttatccttttttttttctttttattctttga-----tcctgata--aaagtttcgtgattgtaatcgttatggtgccttgctatggggtcgcaaa

upper sequence: GLYMA12G09300.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G27600.1 (Arabidopsis thaliana), 5'ss of exon 1
CCCAACGTGAAGTGGAACGACGTCGCGGGGCTTGAGAGCGCCAAGCAGGCTTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattttgacttttcagttttttttttgtttgaacgattgaaggaactttgatgttgaacatttgaaatttaaattgttcgaatggaatggtttcag
|| ||  | ||||||   || || || |||||||| || || || || ||| |||||||||| || || ||||| || |||||||| ||||||||||||||| |   | |  | | |  || | ||  ||     |||   |||||     | |  |  | ||  | |||  ||||   ||||    ||  |   | | ||
CCTAATATCAAGTGGTCAGATGTTGCTGGGCTTGAAAGTGCTAAACAAGCTCTGCAGGAAGCTGTGATTTTGCCTGTCAAGTTTCCACAGTTCTTCACTGgtaaatttgtgtaatctggagctattcatt-----gaagttttgaaaccgttctctttgtaaagttgtgagctttat-ctgttgttttgttact-tcttag

upper sequence: GLYMA12G09300.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0080g00160.t01 (Vitis vinifera), 5'ss of exon 1
CCCAACGTGAAGTGGAACGACGTCGCGGGGCTTGAGAGCGCCAAGCAGGCTTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattttgacttttcagttttttttttgtttgaacgattgaaggaactttgatgttgaacatttgaaatttaaattgttcgaatggaatggtttcag---
|| || |||||||||| ||| || || ||||| ||||| || || ||| |||||||||| || || || ||||| ||||||||||||||||| || |||||| |   | |||| | ||  |   |||  ||   ||     |   |   | ||||  || |||   |||   ||  | | ||  ||| |    ||    ||   
CCTAATGTGAAGTGGAGCGATGTGGCTGGGCTGGAGAGTGCGAAACAGTCTTTGCAGGAGGCAGTGATTTTGCCGGTGAAGTTTCCGCAGTTTTTTACTGgtaatt-tgttgattatttgggactttgatttgatgttttttaatattgattttgtggtggaa---ttgtggttagattggtgagaaagtgtaggaaagagaag

upper sequence: GLYMA12G09300.1 (Glycine max), 5'ss of exon 1
lower sequence: EDP06645 (Chlamydomonas reinhardtii), 5'ss of exon 4
CCCAACGTGAAGTGGAACGACGTCGCGGGGCTTGAGAGCGCCAAGCAGGCTTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattttgacttttcagttttttttttgtttgaacgattgaaggaactttgatgttgaacatttgaaatttaaattgttcgaatggaatggtttcag----------------------------------------------------------
            ||| ||||||| || ||| | ||| |||||||| ||||| || |||| || || |||||||| || ||||| |||||||||||||| ||| ||    |||||      |         |  ||   ||| |    |   |  |  | | | | ||      | |   ||  ||    | | ||   |                                                            
------------TGGGACGACGTGGCCGGGTTGGAGGGCGCCAAGGAGGCTCTGAAGGAGGCAGTGATCTTGCCAGTCAAGTTCCCGCAGTTCTTCACGGgtaagcggattgacgaccatgaacagaagatagttctgcgagtacttgccttgcgtggctcagc-ttccctgctaagggtgcacggggtgcagggcaactaaggcagaagataagcgcacgcggtgcagaacatggtggtgcggcttgtgtgtgcacag

upper sequence: GLYMA12G09300.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S76_197V6.1 (Physcomitrella patens), 5'ss of exon 1
CCCAACGTGAAGTGGAACGACGTCGCGGGGCTTGAGAGCGCCAAGCAGGCTTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattttgacttttcagttttttttttgtttgaacgattgaaggaactttgatgttgaacatttgaaatttaaattgttcgaatggaatggtttcag
|| || ||   ||||   || || || || ||||| || ||||||||||| |||||||| || || |||||||||||||||||||| || || ||||| |||  |||    ||  | || |   |||    |||   |   | | ||    | ||  |  |   | | ||  | |   || | |  ||  |    | |  |
CCAAATGTTCGGTGGGCTGATGTTGCTGGACTTGAAAGTGCCAAGCAGGCGTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAGgtttggaagaagagctctctgcggtttgaccgttatgatactgggagtggttctggaga-ggttaatggacttgttccttctgctcatctatgattgttgg

upper sequence: GLYMA12G09300.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ10867 (Selaginella moellendorffii), 5'ss of exon 1
CCCAACGTGAAGTGGAACGACGTCGCGGGGCTTGAGAGCGCCAAGCAGGCTTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattttgacttttcagtt------ttttttttgtttgaacgattgaaggaactttgatgttgaacatttgaaatttaaattgttcgaatggaatggtttcag
||  | || ||||||| ||| || || ||  | ||||||||||||||||||||||| || ||||| ||  ||||||| ||||| || ||||||||||| ||| ||    | | ||  |  ||       || || || |||      | ||||      | |  ||     |||    |||   |||                    
CCGGATGTCAAGTGGAGCGATGTGGCTGGATTGGAGAGCGCCAAGCAGGCTTTGCAAGAGGCGGTCATACTGCCCGTTAAGTTCCCCCAGTTCTTCACAGgttagtgaatagcctacttggtagcgatgttcttctttttttctttttcgaagaggaagtaactttc----ttttctctttgctttgcag-----------------

upper sequence: GLYMA12G09300.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ25940 (Selaginella moellendorffii), 5'ss of exon 1
CCCAACGTGAAGTGGAACGACGTCGCGGGGCTTGAGAGCGCCAAGCAGGCTTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattttgacttttcagttttttttttgtttgaacgattgaaggaactttgatgttgaac--atttgaaatttaaattgttcgaatggaatggtttcag
||  | || ||||||| ||| || || ||  | ||||||||||||||||||||||| || ||||| ||  ||||||| ||||| || ||||||||||| ||| ||    | | ||  |  ||     | || | |       |        |  || |  |||   |  |    ||    ||| |     |            
CCGGATGTCAAGTGGAGCGATGTGGCTGGATTGGAGAGCGCCAAGCAGGCTTTGCAAGAGGCGGTCATACTGCCCGTTAAGTTCCCCCAGTTCTTCACAGgttagtgaatagtctacttggtagcgatgttctctttctttctttcttttttccgaagaggaagtaaccttcctttctctttgctttgcag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193526444|gb|FK483774.1|FK483774
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
EST: gi|4296956|gb|AI442549.1|AI442549
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
EST: gi|207815901|gb|GD788786.1|GD788786
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
EST: gi|193513514|gb|FK469130.1|FK469130
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
EST: gi|193547969|gb|FK505138.1|FK505138
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTTTTGTTGTACGGACCGCCGGGGACG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTT-GTTGTACGGACCGCCGGGGACG
EST: gi|13480047|gb|BG509390.1|BG509390
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
EST: gi|207740471|gb|GD715291.1|GD715291
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
EST: gi|208294243|gb|GE092116.1|GE092116
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
EST: gi|9987215|gb|BE661323.1|BE661323
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
EST: gi|193712163|gb|FK654870.1|FK654870
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
EST: gi|208321492|gb|GE119545.1|GE119545
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCGGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACTGCCGGGGACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
EST: gi|208248685|gb|GE047668.1|GE047668
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTT-GTTGTACGGACCGCCGGGGACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
EST: gi|208112268|gb|GD913681.1|GD913681
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTT-GTTGTACGGACCGCCGGG-ACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
EST: gi|208168018|gb|GD966076.1|GD966076
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
EST: gi|193715119|gb|FK650228.1|FK650228
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
EST: gi|208332553|gb|GE129476.1|GE129476
EST:     TTTGCAGGAAGCGGTTGTCTTGCCTGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
EST: gi|19346337|gb|BM891217.1|BM891217
EST:     TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTG                         GTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG
genomic: TTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGgtgaggattt ... atggtttcagGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGG