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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCCCGCTGCTGAAGGAGTCTTCACTGACTTAGTCAACAAAAGGGACCTCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttatctatgaacaaacaagcaaacacccttatgtcatttcatccaaaagatcacttctttaaaagaaaaattaagatggtttttttttagttta...

Basic information

species Glycine max
transcript GLYMA12G09200.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09200.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0061g01530.t01 (Vitis vinifera), 5'ss of exon 1
AAGCCCCGCTGCTGAAGGAGTCTTCACTGACTTAGTCAACAAAAGGGACCTCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttatctatgaacaaacaagcaaacacccttatgtcatttcatccaaaagatcacttctttaaaagaaaaattaagatggtttttttttagttta---
|||||| |||||||| || |||||||||||    ||||| || || |  ||  |||| ||||||||||| || |||||||||||||| ||||| ||||||||   ||  |   |      |      |      |  |||   |  ||       | | | | |  ||    | |   | | | || ||  |||   ||    
AAGCCCAGCTGCTGAGGGTGTCTTCACTGATGCTGTCAAGAAGAGAGGGCTGGATTCCAAGTTCAAAATTGATTCTGCTGGCACCATTAATTATCACGAGgtatattggtaatt---tttatgttttatgttgttcttgttcctgaattgtggtaaactcatatggaatgagagaccgatggttgtattggtttccattgagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192316065|gb|FK008890.1|FK008890
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
EST: gi|26269511|gb|CA820574.1|CA820574
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
EST: gi|298167178|gb|HO010617.1|HO010617
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACTATCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAACAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
EST: gi|192332259|gb|FK023908.1|FK023908
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
EST: gi|213603562|gb|DB962708.1|DB962708
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
EST: gi|13252385|gb|BG363288.1|BG363288
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
EST: gi|27424689|gb|CA936209.1|CA936209
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
EST: gi|298194521|gb|HO042993.1|HO042993
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGGG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
EST: gi|192316064|gb|FK008889.1|FK008889
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
EST: gi|208254013|gb|GE055991.1|GE055991
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCACCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAA
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAA
EST: gi|27425137|gb|CA936657.1|CA936657
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
EST: gi|298165521|gb|HO011570.1|HO011570
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAGTGAGGGCAGCTTCAAAAAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
EST: gi|33388402|gb|CA851609.1|CA851609
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
EST: gi|192332260|gb|FK023909.1|FK023909
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
EST: gi|17401417|gb|BM178199.1|BM178199
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
EST: gi|24205701|gb|BU964954.1|BU964954
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
EST: gi|9902999|gb|BE611967.1|BE611967
EST:     TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAG                         GGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT
genomic: TCAATTCGAAGTTCAAAATCGACTCTGCTGGCACCATCAATTACCACGAGgtgggtttat ... attttcgaagGGAAATGAAGCGGATTCGAGAATGAGGGCAGCTTCAAAAAGGCGTGGGATT