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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTCAGACAGCGCAATTGAAAGCTCAGAAGCATTGTTCCGATAAATCTTCGCAGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAGgtatgtattcctatcctctaacataatcaatttcgggttctgtttttcgtttcaattcaaaagtaagaaatttagcggtggatttgggttgggaatag

Basic information

species Glycine max
transcript GLYMA12G07250.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193409360|gb|FK374610.1|FK374610
EST:     TCGCAGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAG                         GAACGGCTTCTGGGAGCTTCGTTGGGAGTGGTATTAACGGGGGTGGTTGTG
genomic: TCGCAGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAGgtatgtattc ... ttgggaatagGAACGGCTTCTGGGAGCTTCGTTGGGAGTGGTATTAACGGGGGTGGTTGTG
EST: gi|207684426|gb|GD665673.1|GD665673
EST:     TCGCAGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAG                         GAACGGCTTCTGGGAGCTTCGTTGGGAGTGGTATTAACGGGGGTGGTTGTG
genomic: TCGCAGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAGgtatgtattc ... ttgggaatagGAACGGCTTCTGGGAGCTTCGTTGGGAGTGGTATTAACGGGGGTGGTTGTG
EST: gi|213603514|gb|DB966637.1|DB966637
EST:     TCGCAGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAG                         GAACGGCTTCTGGGAGCTTCGTTGGGAGTGGTATTAACGGGGGTGGTTGTG
genomic: TCGCAGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAGgtatgtattc ... ttgggaatagGAACGGCTTCTGGGAGCTTCGTTGGGAGTGGTATTAACGGGGGTGGTTGTG
EST: gi|208143903|gb|GD943662.1|GD943662
EST:     TCGCAGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAG                         GAACGGCTTCTGGGAGCTTCGTTGGGAGTGGTATTAACGGGGGTGGTTGTG
genomic: TCGCAGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAGgtatgtattc ... ttgggaatagGAACGGCTTCTGGGAGCTTCGTTGGGAGTGGTATTAACGGGGGTGGTTGTG
EST: gi|298181297|gb|HO022736.1|HO022736
EST:     TCGCAGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAG                         GAACGGCTTCTGGGAGCTTCGTTGGGAGTGGTATTAACGGGGGTGGTTGTG
genomic: TCGCAGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAGgtatgtattc ... ttgggaatagGAACGGCTTCTGGGAGCTTCGTTGGGAGTGGTATTAACGGGGGTGGTTGTG
EST: gi|193422656|gb|FK385873.1|FK385873
EST:     TCGCAGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAG                         GAACGGCTTCTGGGAGCTTCGTTGGGAGTGGTATTAACGGGGGTGGTTGTG
genomic: TCGCAGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAGgtatgtattc ... ttgggaatagGAACGGCTTCTGGGAGCTTCGTTGGGAGTGGTATTAACGGGGGTGGTTGTG
EST: gi|298179927|gb|HO025142.1|HO025142
EST:     TCGCTGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAG                         GAACGGCTTCTGGGAGCTTCGTTGGGAGCGGTATTAACGGGGGTGGTTGTG
genomic: TCGCAGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAGgtatgtattc ... ttgggaatagGAACGGCTTCTGGGAGCTTCGTTGGGAGTGGTATTAACGGGGGTGGTTGTG
EST: gi|208216711|gb|GE013021.1|GE013021
EST:     CGCAGGAAAACAAAACAAAAGGGAAAAGGATGATTAGCATTCTGAGCCAG                         GAACGGCTTCTGGGAGCTTCGTTGGGAGCGGTATTAACGGGGGTGGTTGTG
genomic: CGCAGGAAAACAAAACAAAAGGG-AAAGGATGATTAGCATTCTGAGCCAGgtatgtattc ... ttgggaatagGAACGGCTTCTGGGAGCTTCGTTGGGAGTGGTATTAACGGGGGTGGTTGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGGTCAGACAGCGCAATTGAAAGCTCAGAAGCATTGTTCCGATAAATCTTCGCAGGAAAACAAAACAAAAGGGAAAGGATGATTAGCATTCTGAGCCAGgtatgtattcctatcctctaacataatcaatttcgggttctgtttttcgtttcaattcaaaagtaagaaatttagcggtggatttgggttgggaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG