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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAAACCCTAGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgactgtgcctcgtcactctacgctaattgcttggtttcacgccgttgatggtttcagaattttaattttcttttttatttcag

Basic information

species Glycine max
transcript GLYMA12G07160.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204245|gb|BI427013.1|BI427013
EST:     CTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: CTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|192325956|gb|FK016633.1|FK016633
EST:     AGAGCCGGCTTCTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|298169507|gb|HO020867.1|HO020867
EST:     AGAGCCGGCTTCTTCCTCTGCGCGG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|298199222|gb|HO042585.1|HO042585
EST:     AGAGCCGGCTTCCTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|192334787|gb|FK025278.1|FK025278
EST:     AGAGCCGGCTTCTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|31459892|gb|CD401920.1|CD401920
EST:     CTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: CTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|192333770|gb|FK025493.1|FK025493
EST:     AGAGCCGGCTTCTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|192322634|gb|FK014371.1|FK014371
EST:     TTCTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: TTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|7589639|gb|AW705409.1|AW705409
EST:     CTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: CTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|192298569|gb|FG989230.1|FG989230
EST:     AGAGCCGGCTTCTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|192309839|gb|FK002951.1|FK002951
EST:     AGAGCCGGCTTCTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|298185275|gb|HO030488.1|HO030488
EST:     AGAGCCGGCTTCTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|298171333|gb|HO016365.1|HO016365
EST:     AGAGCCGGCTTCTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|298171197|gb|HO016229.1|HO016229
EST:     AGAGCCGGCTTCTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|298185070|gb|HO030283.1|HO030283
EST:     AGAGCCGGCTTCTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|298182573|gb|HO031308.1|HO031308
EST:     AGAGCCGGCTTCTTCCTCCGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|298179669|gb|HO024884.1|HO024884
EST:     AGAGCCGGCTTCTTCCTCTGCGCAG                         GGATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCTTAAAG
genomic: AGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|4405507|gb|AI507656.1|AI507656
EST:     TTCTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: TTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|298189111|gb|HO037514.1|HO037514
EST:     CGAAAACCCTAGAGCCGGCTTCTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: CGAAAACCCTAGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|213607106|gb|DB965076.1|DB965076
EST:     GAGCCGGCTTCTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: GAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|213620283|gb|DB961428.1|DB961428
EST:     CTAGAGCCGGCTTCTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: CTAGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|5677357|gb|AI938487.1|AI938487
EST:     CCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: CCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|298175473|gb|HO015106.1|HO015106
EST:     AGAGCCGGCTTCTTCCTCTGCGCAG                         GAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTTCCTCTGCGCAGgtttgtgact ... tttatttcagGAATTAGGAATATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG