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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTCTATTTCTTACCTTGGAGTTGCATTGCTTGGAGTAGGAATCGCTCTAGATTTTTTTCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTGgtaatctttaacccataattgttttattccgaaattttttgcatggagattgatttcacttttctgtggggttatgctgggttctattcaagtttccctc...

Basic information

species Glycine max
transcript GLYMA12G07020.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14516430|gb|BI095102.1|BI095102
EST:     GTGGATTTGAGTCTTCATTG                         CTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAATGGAATG
genomic: GTGGATTTGAGTCTTCATTGgtaatcttta ... cactctttagCTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAATGGAATG
EST: gi|21889425|gb|BQ742638.1|BQ742638
EST:     TAGANNNNNNNCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTG                         CTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAATGGAATG
genomic: TAGATTTTTTTCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTGgtaatcttta ... cactctttagCTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAATGGAATG
EST: gi|192296082|gb|FG989448.1|FG989448
EST:     TAGANNNNNNNCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTG                         CTGGAGAGTGTGTCGTTTTGCCTGTCATTGCAGGGAACCAGGAATGGAATG
genomic: TAGATTTTTTTCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTGgtaatcttta ... cactctttagCTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAATGGAATG
EST: gi|298173279|gb|HO016615.1|HO016615
EST:     TAGANNNNNNNCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTG                         CTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAATGGGAAT
genomic: TAGATTTTTTTCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTGgtaatcttta ... cactctttagCTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAAT-GGAAT
EST: gi|22539767|gb|BU089610.1|BU089610
EST:     TAGANNNNNNNCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTG                         CTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAATGGAATG
genomic: TAGATTTTTTTCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTGgtaatcttta ... cactctttagCTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAATGGAATG
EST: gi|298185585|gb|HO030798.1|HO030798
EST:     TAGANNNNNNNCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTG                         CTGGAGAGTGTGTCGTTTTGCCTGCCATTGTAGGGAACCAGGAATGGGAAT
genomic: TAGATTTTTTTCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTGgtaatcttta ... cactctttagCTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAAT-GGAAT
EST: gi|298163570|gb|HO012303.1|HO012303
EST:     TAGANNNNNNNCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTG                         CTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAATGGAATG
genomic: TAGATTTTTTTCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTGgtaatcttta ... cactctttagCTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAATGGAATG
EST: gi|192307333|gb|FK000717.1|FK000717
EST:     GGAAGTGGATTTGAGTCTTCATTG                         CTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAATGGAATG
genomic: GGAAGTGGATTTGAGTCTTCATTGgtaatcttta ... cactctttagCTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAATGGAATG
EST: gi|192310264|gb|FK000716.1|FK000716
EST:     TAGANNNNNNNCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTG                         CTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAATGGAATG
genomic: TAGATTTTTTTCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTGgtaatcttta ... cactctttagCTGGAGAGTGTGTCGTTTTGCCTGTCATTGTAGGGAACCAGGAATGGAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGTTCTATTTCTTACCTTGGAGTTGCATTGCTTGGAGTAGGAATCGCTCTAGATTTTTTTCTTACAACTGGGGGAGGAAGTGGATTTGAGTCTTCATTGgtaatctttaacccataattgttttattccgaaattttttgcatggagattgatttcacttttctgtggggttatgctgggttctattcaagtttccctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA