1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGATTGCACTCTCACCAATGGGAGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTGGCCTTCCCACCTCAAGTCAAACCTTCACAACTTGTCTGATAATGgtgactttccttttcccacttcacaacaacaaaaaggtgttatttttaatctgaatgctaacttcatttttgtttttgatttctgggtacag
species | Glycine max |
transcript | GLYMA12G06200.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGGTGGCCTTCCCACCTCAAGTCAAACCTTCACAACTTGTCTGATAATG ATGATGATGGGAAGAGGGATGAGAATGATCCTCGGGGAGGGTTCAGTGAGTEST: gi|208062154|gb|GD855906.1|GD855906
genomic: CTGGTGGCCTTCCCACCTCAAGTCAAACCTTCACAACTTGTCTGATAATGgtgactttcc ... ctgggtacagATGATGATGGGAAGAGGGATGAGAATGATCCTCGGGGAGGGTTCAGTGAGT
EST: CTGGTGGCCTTCCCACCTCAAATCAAACCTTCACAACTTGTCTGATAATG ATGATGATGGGAAGAGGGATGAGAATGATCCTCGGGGAGGGTTCAGTGAGTEST: gi|193636867|gb|FK582168.1|FK582168
genomic: CTGGTGGCCTTCCCACCTCAAGTCAAACCTTCACAACTTGTCTGATAATGgtgactttcc ... ctgggtacagATGATGATGGGAAGAGGGATGAGAATGATCCTCGGGGAGGGTTCAGTGAGT
EST: CTGGTGGCCTTCCCACCTCAAGTCAAACCTTCACAACTTGTCTGATAATG ATGATGATGGGAAGAGGGATGAGAATGATCCTCGGGGAGGGTTCAGTGAGT
genomic: CTGGTGGCCTTCCCACCTCAAGTCAAACCTTCACAACTTGTCTGATAATGgtgactttcc ... ctgggtacagATGATGATGGGAAGAGGGATGAGAATGATCCTCGGGGAGGGTTCAGTGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATTGCACTCTCACCAATGGGAGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTGGCCTTCCCACCTCAAGTCAAACCTTCACAACTTGTCTGATAATGgtgactttccttttcccacttcacaacaacaaaaaggtgttatttttaatctgaatgctaacttcatttttgtttttgatttctgggtacag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG