1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCGGGCGAATTGGACGACCTCGATCTCGTCGCCCTCGAGCAAGAAGCCAAGGATGCCGTCGAAGCGTATTCAAGCTCTCTGTCTCAAATTTTGAGCATTGgtgagtcttcttttcattgagcttttgctcgtctttgtagtgagtcttcaatatcgacctttctgtgtttggtgatttcag
species | Glycine max |
transcript | GLYMA12G06150.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGATGCCGTCGAAGCGTATTCAAGCTCTCTGTCTCAAATTTTGAGCATTG AAGACGAGGAGAAAAGTGATCGCAAGGAATCAGCTCAATCACGCAGGAAGAEST: gi|16284290|gb|BI946004.1|BI946004
genomic: GGATGCCGTCGAAGCGTATTCAAGCTCTCTGTCTCAAATTTTGAGCATTGgtgagtcttc ... gtgatttcagAAGACGAGGAGAAAAGTGATCGCAAGGAATCAGCTCAATCACGCAGGAAGA
EST: GGATGCCGTCGAAGCGTATTCAAGCTCTCTGTCTCAAATTTTGAGCATTG AAGACGAGGAGAAAAGTGATCGCAAGGAATCAGCTCAATCACGCAGGAAGAEST: gi|213617121|gb|DB963594.1|DB963594
genomic: GGATGCCGTCGAAGCGTATTCAAGCTCTCTGTCTCAAATTTTGAGCATTGgtgagtcttc ... gtgatttcagAAGACGAGGAGAAAAGTGATCGCAAGGAATCAGCTCAATCACGCAGGAAGA
EST: GGATGCCGTCGAAGCGTATTCAAGCTCTCTGTCTCAAATTTTGAGCATTG AAGACGAGGAGAAAAGTGATCGCAAGGAATCAGCTCAATCACGCAGGAAGA
genomic: GGATGCCGTCGAAGCGTATTCAAGCTCTCTGTCTCAAATTTTGAGCATTGgtgagtcttc ... gtgatttcagAAGACGAGGAGAAAAGTGATCGCAAGGAATCAGCTCAATCACGCAGGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGGCGAATTGGACGACCTCGATCTCGTCGCCCTCGAGCAAGAAGCCAAGGATGCCGTCGAAGCGTATTCAAGCTCTCTGTCTCAAATTTTGAGCATTGgtgagtcttcttttcattgagcttttgctcgtctttgtagtgagtcttcaatatcgacctttctgtgtttggtgatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT