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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATATTGGATCCCTACTTCTTCTCAGATTCTGATTGGTCCAACACAGTTCCCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGgtttgtcacctttggtcattttgatgatcaatttccttcgatcgaggagaataataaaataatcaagacaatatagtaatagttaccggtgaatagaatt...

Basic information

species Glycine max
transcript GLYMA12G06080.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06080.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g01870.t01 (Vitis vinifera), 5'ss of exon 1
ACAATATTGGATCCCTACTTCTTCTCAGATTCTGATTGGTCCAACACAGTTCCCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGgtttgtcacctttggtcattttgatgatcaatttccttcgatcgaggagaataataaaataatcaagacaatatagtaatagttaccggtgaatagaatt
 || ||||||||||| ||  |||||||||||||||||||||| || |||||  | || || ||||| || ||||| |||||||||||||||||||||||||| |||    |    | |      || | ||    ||||  |    |    | ||    |         |  | ||  | ||  |||     |     ||
TCAGTATTGGATCCCAACGCCTTCTCAGATTCTGATTGGTCCTACTCAGTTTGCTTGTCCTCTTTGCTTTAAGACCTTCAACAGATACAACAACATGCAGgtatgtttaatgaaattaacccattgcttaaaaaacttccctttctgtttttgatccttttgattttgtagaaaagagaaagaaaccccattactatctt