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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGATAAGCTCACTTTGCTTTTGACCTGTTCAAACCCACCAAAAGGATTGAAACCCGGTTTCTATTGGTATGATAAAGCATCTGGATTTTGGGGGAAGgtaattaaagattaaaactttcatatatactcttatttttgtttaatctgagtgctgcttattgaacttcaacttactctttatgttttcttcacaagcaaagctcaaatatgatgtactgcttgatcgtgcag

Basic information

species Glycine max
transcript GLYMA12G05180.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G05180.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv03s0063g01780.t01 (Vitis vinifera), 5'ss of exon 1
TTGGGATAAGCTCACTTTGCTTTTGACCTGTTCAAACCCACCAAAAGGATTGAAACCCGGTTTCTATTGGTATGATAAAGCATCTGGATTTTGGGGGAAGgtaattaaagattaaaactttcatatatactcttatttttgtttaatctgagtgctgcttattgaacttca-acttactctttatgttttctt-cacaagcaaagctcaaatatgatgtactgcttgatcgtgcag
|   ||  || |   |||  |   || |||| |||| || || |||    | ||||||||    |||||||||||||||| ||||||  ||||||||||||| | |    |||    | |   | |||    |||| ||| |||||| |        || |||  | |  |   |||     ||  || |||  | ||| ||||                                
TCAAGAAGAGATGGTTTTTTTGAAGAGCTGTCCAAAGCCGCCGAAAAAGCTAAAACCCGGAAGATATTGGTATGATAAAGTATCTGGTCTTTGGGGGAAGgtgaatctgaattctgccctctttttat---tttatattt-tttaatttatac----ctcattatattgtatgtttatgggataaattctctggctcaatcaaacag-----------------------------