Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTCTCATATTGTTTAGGTTTTCTTAGTCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctttattgctctaccattcaatcaccaaatttcatctccttttcgttgtaccttgtttgggtttatgttaattattggttacatcggtttctc...

Basic information

species Glycine max
transcript GLYMA12G04380.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9983441|gb|BE657549.1|BE657549
EST:     TACCCCTTGNNACCAACACTGAGCTTNNNNGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|298168121|gb|HO013384.1|HO013384
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|9902153|gb|BE611121.1|BE611121
EST:     ACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: ACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|10237202|gb|BE806090.1|BE806090
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|19937846|gb|BQ081442.1|BQ081442
EST:     ACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: ACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|6913531|gb|AW395061.1|AW395061
EST:     AACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: AACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|192302463|gb|FG994799.1|FG994799
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGAGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|7640359|gb|AW734662.1|AW734662
EST:     TTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|16346057|gb|BI971652.1|BI971652
EST:     CTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|4293239|gb|AI442019.1|AI442019
EST:     CAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|19052898|gb|BM731565.1|BM731565
EST:     CTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|209716143|gb|BW662328.1|BW662328
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|14259389|gb|BG882297.1|BG882297
EST:     CCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|209701276|gb|BW652698.1|BW652698
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|7924235|gb|AW830261.1|AW830261
EST:     TTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|192302464|gb|FG994800.1|FG994800
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGAGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|21887800|gb|BQ741013.1|BQ741013
EST:     CCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|4313645|gb|AI460764.1|AI460764
EST:     CCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|254347080|gb|GR856750.1|GR856750
EST:     CTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|151410197|gb|EV280012.1|EV280012
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|15287532|gb|BI471423.1|BI471423
EST:     CCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|16280956|gb|BI944235.1|BI944235
EST:     CAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|298182768|gb|HO031503.1|HO031503
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGGACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|18039394|gb|BM307688.1|BM307688
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|19053202|gb|BM731869.1|BM731869
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|13181199|gb|BG352539.1|BG352539
EST:     CCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|5605758|gb|AI899822.1|AI899822
EST:     CCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|27424685|gb|CA936205.1|CA936205
EST:     ACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: ACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|14258527|gb|BG881435.1|BG881435
EST:     CCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|17022353|gb|BM093387.1|BM093387
EST:     TGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|31473159|gb|CD415187.1|CD415187
EST:     GCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: GCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|7041616|gb|AW471568.1|AW471568
EST:     TACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|10709203|gb|BF008927.1|BF008927
EST:     CCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|10234254|gb|BE803142.1|BE803142
EST:     CTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|192327160|gb|FK015552.1|FK015552
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|26267877|gb|CA818940.1|CA818940
EST:     CTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|16280798|gb|BI944151.1|BI944151
EST:     CACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|12496222|gb|BG046956.1|BG046956
EST:     GCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: GCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|4291776|gb|AI441810.1|AI441810
EST:     GCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: GCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|192297743|gb|FG992791.1|FG992791
EST:     TTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|9259018|gb|BE347165.1|BE347165
EST:     CTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|213620321|gb|DB961466.1|DB961466
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|209707112|gb|BW653224.1|BW653224
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|5058413|gb|AI736945.1|AI736945
EST:     TTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|4288784|gb|AI441382.1|AI441382
EST:     TTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|8283824|gb|BE021383.1|BE021383
EST:     CCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|37995603|gb|CF807192.1|CF807192
EST:     TAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|120531747|gb|EH259880.1|EH259880
EST:     GAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: GAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|298173480|gb|HO016816.1|HO016816
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|7588517|gb|AW704241.1|AW704241
EST:     GCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: GCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|6724811|gb|AW309210.1|AW309210
EST:     ACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: ACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|19934647|gb|BQ079677.1|BQ079677
EST:     CCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|31561120|gb|CD486958.1|CD486958
EST:     CCCCTTGCTACCAGCGAGTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CCCCTTGCTACCAAC-ACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|192334417|gb|FK024110.1|FK024110
EST:     TCAGACTTACCCCTTGCTACCGACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|208110922|gb|GD914072.1|GD914072
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAG
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAG
EST: gi|192331057|gb|FK020277.1|FK020277
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|9563845|gb|BE473354.1|BE473354
EST:     CTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|208143674|gb|GD942047.1|GD942047
EST:     TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|15288097|gb|BI471988.1|BI471988
EST:     CTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|4395727|gb|AI494724.1|AI494724
EST:     TTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|192334416|gb|FK024109.1|FK024109
EST:     TCAGACTTACCCCTTGCTACCGACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: TCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|58018072|gb|CX704814.1|CX704814
EST:     CCAACACTGAGCTTAACCGAGCTT--CAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|31459158|gb|CD401186.1|CD401186
EST:     GACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: GACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|8826368|gb|BE210098.1|BE210098
EST:     CCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|31468818|gb|CD410846.1|CD410846
EST:     GCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: GCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|4306905|gb|AI443971.1|AI443971
EST:     CTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|9900155|gb|BE609123.1|BE609123
EST:     CCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|58025035|gb|CX711776.1|CX711776
EST:     GCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: GCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
EST: gi|7693121|gb|AW761218.1|AW761218
EST:     CTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAG                         ATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA
genomic: CTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctt ... ctttacccagATGAATCGGGAAAAGTTAATGAAGATGGCCGGTTCGGTTAGAACTGGAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCTTCTCATATTGTTTAGGTTTTCTTAGTCAGACTTACCCCTTGCTACCAACACTGAGCTTAACCGAGCTTCGCAAAGgtaccatctttattgctctaccattcaatcaccaaatttcatctccttttcgttgtaccttgtttgggtttatgttaattattggttacatcggtttctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG