1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGCTTCTCATGATGCTGCTCATGTTTGGAGAGTTCGTGATCTTGCTCTCTCCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATTgtaacttttctcatttcccttttcatacccttccccttttcttttactttatttttcaatttcccattcccattatag
species | Glycine max |
transcript | GLYMA12G02920.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATT GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGEST: gi|208291345|gb|GE094567.1|GE094567
genomic: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATTgtaacttttc ... cccattatagGTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG
EST: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATT GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGEST: gi|7693079|gb|AW761177.1|AW761177
genomic: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATTgtaacttttc ... cccattatagGTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG
EST: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATT GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCATEST: gi|298164120|gb|HO013765.1|HO013765
genomic: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATTgtaacttttc ... cccattatagGTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG
EST: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATT GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGEST: gi|24135503|gb|BU926013.1|BU926013
genomic: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATTgtaacttttc ... cccattatagGTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG
EST: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATT GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGEST: gi|213611749|gb|DB958871.1|DB958871
genomic: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATTgtaacttttc ... cccattatagGTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG
EST: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATT GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGEST: gi|208070360|gb|GD870897.1|GD870897
genomic: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATTgtaacttttc ... cccattatagGTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG
EST: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATT GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATEST: gi|208295162|gb|GE091285.1|GE091285
genomic: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATTgtaacttttc ... cccattatagGTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAAT
EST: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATT GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGEST: gi|298177471|gb|HO023604.1|HO023604
genomic: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATTgtaacttttc ... cccattatagGTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG
EST: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATT GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGEST: gi|298168341|gb|HO014516.1|HO014516
genomic: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATTgtaacttttc ... cccattatagGTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG
EST: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATT GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGEST: gi|298190152|gb|HO032273.1|HO032273
genomic: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATTgtaacttttc ... cccattatagGTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG
EST: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATT GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAGEST: gi|298185748|gb|HO028059.1|HO028059
genomic: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATTgtaacttttc ... cccattatagGTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG
EST: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATT GTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG
genomic: CCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATTgtaacttttc ... cccattatagGTTGAGCTTGCTGCGCTTCTCCATGACATAGCTGACTACAAATACCTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTTCTCATGATGCTGCTCATGTTTGGAGAGTTCGTGATCTTGCTCTCTCCCTTGCCAAAGAGGAAGGCCTCTCTTCCAATCCCCACTCCATGGAAATTgtaacttttctcatttcccttttcatacccttccccttttcttttactttatttttcaatttcccattcccattatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA