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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGGCTTGTTGTTTATGGGGCTGCAAACAGCTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAGGATAAGgttattccattgtccatgactgttaaatgaatgatttcctttaatttaacttgcaactctttttgcatcatctttagttgaagtctgtactcaaatgaaa...

Basic information

species Glycine max
transcript GLYMA12G01850.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01850.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G28510.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGTGGGCTTGTTGTTTATGGGGCTGCAAACAGCTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAGGATAAGgttattccattgtccatgactgttaaatgaatgatttcctttaatttaacttgcaactctttttgcatcatctttagttgaagtctgt---actcaaatgaaa-----
||||||||||| | | ||||| ||| |  ||||  | ||||||||||| ||||| |||||||||||  | ||||||||| | |||||| | || |||||||||| || | |||   |     | ||||    | | |  ||  ||||    |  |  | ||||  ||     |||  |||  || |||   | |   ||||||     
TGGTGGGCTTGGTCTCTATGGTGCTACGCACAGTCTCTACAATGTTGAAGGAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtc-agtgtttct-----tcaaattg--ggtctttttggattttcagtaaatgtattttcccaatgagtttttttgctgtttgtgagatttggatgaaattttc

upper sequence: GLYMA12G01850.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G20530.2 (Arabidopsis thaliana), 5'ss of exon 3
TGGTGGGCTTGTTGTTTATGGGGCTGCAAACAGCTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAGGATAAGgttattccattgtccatgactgttaaatgaatgatttcctttaatttaacttgcaactctttttgcatcatctttagttgaagtctgtactcaaatgaaa-----
||| |||||   | |||| || ||| |  |||   | |||||||| || ||||||||||||||||||||||| || ||  |||| ||| |||| || ||||||| |||     |    |   ||   |   |      || ||  || ||    ||   | |     | |  | ||| ||||||  |        |   |     
TGGGGGGCTCAGTCTTTACGGTGCTACGCACACTCTCTACAATGTCGATGGAGGTCATCGAGCCATTGTCTTTAACCGGCTTGTTGGTATCAAAGACAAGgttagtcc-----ctgcaaaaattggtttcttctgaatctgtatattgacaatgaatcttgtggttgtgacatctagctgaagttaggttaggcttagcattact

upper sequence: GLYMA12G01850.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv15s0048g02350.t01 (Vitis vinifera), 5'ss of exon 3
TGGTGGGCTTGTTGTTTATGGGGCTGCAAACAGCTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAGGATAAGgttattccattgtccatgactgtt---aaatgaa---tgatttcctttaatttaacttgcaactctttttgcatcatctttagttgaagtctgtactcaaatgaaa
|||||||||||   | ||||| |||   |||||  ||||||||||||||||||| ||||| |||||||| || |||||  |  | |||||||| |||||||||  ||  ||  || ||  |  |   | ||||    | |  ||| |||| |||  ||    ||||  ||  ||  | |||  | |     ||   | | ||    
TGGTGGGCTTGGATTGTATGGAGCTATTAACAGTCTGTACAATGTTGAGGGAGGCCATCGGGCCATTGTGTTTAATCGCATAATTGGTGTCAAAGATAAGgtt-ctcatttccccttggtttcttgcatatgagacctaaaatccattaaatta-tttttgtctctacttatatggtttttt-tgggtaattgcttttagatt---

upper sequence: GLYMA12G01850.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv19s0085g00730.t01 (Vitis vinifera), 5'ss of exon 3
TGGTGGGCTTGTTGTTTATGGGGCTGCAAACAGCTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAGGATAAGgttattccattgtccatgactgtt---aaatgaa---tgatttcctttaatttaacttgcaactctttttgcatcatctttagttgaagtctgtactcaaatgaaa
||||||||||| | | ||||| |||   |||||  ||||||||||||||||||||||||| |||||||| || |||||  | || ||||||||||| ||||||  ||  ||  || ||  |  |   | ||||    |||  ||| |||| |||  ||    ||||  ||  ||  | |||  | |     ||   | | ||    
TGGTGGGCTTGGTTTGTATGGAGCTATTAACAGTCTGTACAATGTTGAGGGAGGTCATCGGGCCATTGTGTTTAATCGCATAGTTGGTGTCAAGGACAAGgtt-ctcatttccccttggtttcttgcatatgagacctgaaatccattaaatta-tttttgtctctgcttatatggttttt--tgggtaattgcttttagattt--

upper sequence: GLYMA12G01850.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S41_59V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTGGGCTTGTTGTTTATGGGGCTGCAAACAGCTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAGGATAAGgttattccattgtccatgactgttaaatgaatga---tttcctttaatttaacttgcaactctttttgcatcatctttagttgaagtctgtactcaaatgaaa--------------
 |||||  |||  || ||||  || |  |||   ||||||||||| |||||||| || ||||||||||| || |||||  |||| ||||||||||||||||| | |   |      ||| ||| || || ||     |||  |   |   || ||| |  | |||| |  |     ||  |||| |   ||     | |   |              
CGGTGGCATTGGGGTGTATGCTGCGGTCAACTCGTTGTACAATGTGGAGGGAGGGCACCGAGCCATTGTGTTTAATCGCATTGTAGGTGTCAAGGATAAGgtgagtgagtga---gtgagtgtgaattgcattggtctttgatgagacggaatttggatttgttttagggtttggatt--ttgacgatcgtggcggatttcgaggatggccttgcag

upper sequence: GLYMA12G01850.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ20024 (Selaginella moellendorffii), 5'ss of exon 1
TGGTGGGCTTGTTGTTTATGGGGCTGCAAACAGCTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAGGATAAGgttattccattgtccatgactgttaaatgaatgatttcctttaatttaacttgcaactctttttgcatcatctttagttgaagtct-gtactcaaatgaaa
 |  ||  | |   | || |     || ||||||||||||||||| || |  || ||||| ||||| |||||||||||  | ||||| |||||||| |||||        |  ||   |   |   ||   |   |  |||| ||||         | ||||||| |   |  |   ||||  | | |   || |      
CGCCGGTGTGGGGATCTACGCCCTCGCCAACAGCTTGTACAATGTGGACGCCGGGCATCGCGCCATCGTCTTCAATCGCCTCGTCGGGGTCAAGGACAAGgtaggcgagcttgccgcaagcatcgcattgct--ctctcttttatttcggggatcgccctttttgtagagt--tcgattgatcttttgccttccag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6454694|gb|AW185377.1|AW185377
EST:     TCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAGGATAAG                         GTTTATCCTGAAGGGACACATATTATGATTCCTTTGTTCGAGAGGCCTGTG
genomic: TCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAGGATAAGgttattccat ... ttgaatgaagGTTTATCCTGAAGGGACACATATTATGATTCCTTTGTTCGAGAGGCCTGTG