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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGCTTTTATGACTCGGATTCCACTGTTTCGCTTTCGGATCATCGTGCTGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtattttcattttctacaagcccactcatgctagccgagtagcttccactgtctttgttacatgctcacagaatggttacactgttatgtatgattaatt...

Basic information

species Glycine max
transcript GLYMA12G01690.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285433|gb|BI469324.1|BI469324
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtattttcat ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|20498613|gb|BQ273543.1|BQ273543
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtattttcat ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|10235604|gb|BE804492.1|BE804492
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAT
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtattttcat ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|193680638|gb|FK621142.1|FK621142
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtattttcat ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|20814819|gb|BQ299297.1|BQ299297
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtattttcat ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|7283465|gb|AW596072.1|AW596072
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAN
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtattttcat ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|15285390|gb|BI469281.1|BI469281
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtattttcat ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|27446329|gb|CA953452.1|CA953452
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtattttcat ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|18733793|gb|BM527813.1|BM527813
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtattttcat ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|151394148|gb|EV264019.1|EV264019
EST:     GAATGATCCAAGAGTCTCTTCGCTTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: GAATGATCCAAGAGTCTCTTCGC-TTTGCCTCTGTTTCTGgtattttcat ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|9204856|gb|BE331080.1|BE331080
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAN
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtattttcat ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|23732822|gb|BU764585.1|BU764585
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtattttcat ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|20498372|gb|BQ273302.1|BQ273302
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtattttcat ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|254344754|gb|GR855518.1|GR855518
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtattttcat ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATGGCTTTTATGACTCGGATTCCACTGTTTCGCTTTCGGATCATCGTGCTGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtattttcattttctacaagcccactcatgctagccgagtagcttccactgtctttgttacatgctcacagaatggttacactgttatgtatgattaatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccactc