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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGCTTTTATGACCCGGATTCCACTGTTTCGCTTTCGGATCATCGTCTTGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttaggttttatttttgaaattgagtaaaaaaactctattagatttaagagcttacacatatactcccaccagatgcaatatggactacatgatg...

Basic information

species Glycine max
transcript GLYMA12G01680.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602117|gb|DB962610.1|DB962610
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|57575258|gb|CX548233.1|CX548233
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|192319801|gb|FK013801.1|FK013801
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|14125812|gb|BG790250.1|BG790250
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|151406224|gb|EV276039.1|EV276039
EST:     GAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: GAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|120531233|gb|EH259366.1|EH259366
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|58023365|gb|CX710106.1|CX710106
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|13482030|gb|BG511373.1|BG511373
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|26056288|gb|CA799202.1|CA799202
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
EST: gi|19346081|gb|BM890961.1|BM890961
EST:     TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTG                         AGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG
genomic: TGCTCAGATCCGAATGATCCAAGAGTCTCTTCGCTTTGCCTCTGTTTCTGgtatatttag ... gaatggtcagAGGAGCGTAGTAAATGGCCCAAGAGTATAGTTGATGTTGGGTGTGGCATAG