1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCCTTCGATTGGTACCAGCGTTACTCTGCTCTCAGGCCTTTTGTTCGCAATTTCATCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATGCTGgttggtactacaattccccttctctcccttcttttatttagggtttcttaatcattttctcttcactaaatggaagaatactgtcgtattttacag
species | Glycine max |
transcript | GLYMA12G01270.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTTCACCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATGCTG TTATGTCTGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTGEST: gi|4397532|gb|AI496529.1|AI496529
genomic: TTTCATCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATGCTGgttggtacta ... tattttacagTTATGTCTGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTG
EST: TTTCATCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATGCTG TTATGTCTGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTGEST: gi|15287181|gb|BI471072.1|BI471072
genomic: TTTCATCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATGCTGgttggtacta ... tattttacagTTATGTCTGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTG
EST: TTTCATCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATGCTG TTATGTCTGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTG
genomic: TTTCATCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATGCTGgttggtacta ... tattttacagTTATGTCTGAGGATATGGTCAAAGATGGTTACGAGGACATCGTCAATATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTCGATTGGTACCAGCGTTACTCTGCTCTCAGGCCTTTTGTTCGCAATTTCATCCCTCTTTCTTCCAGGATTCTCATGGTTGGTTGCGGCAATGCTGgttggtactacaattccccttctctcccttcttttatttagggtttcttaatcattttctcttcactaaatggaagaatactgtcgtattttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG