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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTACACCAATAACAGGCCCAGATGGTGTTTGATGGCCGCCCAGGAATCCGACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGgtcccttttctattctctctctctctctctctcttttttcctttcttcattcttccattctattctatccgcag

Basic information

species Glycine max
transcript GLYMA12G00600.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120491443|gb|EH219610.1|EH219610
EST:     G-CTCTTCTTTTGCACCCTCTCTTGACTCCTACAAAACCGCCTCTGCTGG                         ATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
genomic: GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGgtcccttttc ... ctatccgcagATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
EST: gi|6566524|gb|AW234167.1|AW234167
EST:     GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCACTGCTGG                         ATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
genomic: GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGgtcccttttc ... ctatccgcagATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
EST: gi|19269603|gb|BM885859.1|BM885859
EST:     CGCCTCTGCTGG                         ATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
genomic: CGCCTCTGCTGGgtcccttttc ... ctatccgcagATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
EST: gi|18038871|gb|BM307165.1|BM307165
EST:     GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGG                         ATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
genomic: GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGgtcccttttc ... ctatccgcagATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
EST: gi|9819295|gb|BE554808.1|BE554808
EST:     GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGG                         ATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
genomic: GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGgtcccttttc ... ctatccgcagATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
EST: gi|13479753|gb|BG509096.1|BG509096
EST:     GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCACTGCTGG                         ATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
genomic: GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGgtcccttttc ... ctatccgcagATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
EST: gi|33389909|gb|CA853116.1|CA853116
EST:     GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCACTGCTGG                         ATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
genomic: GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGgtcccttttc ... ctatccgcagATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
EST: gi|298167160|gb|HO010599.1|HO010599
EST:     GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGG                         ATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
genomic: GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGgtcccttttc ... ctatccgcagATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
EST: gi|13480083|gb|BG509426.1|BG509426
EST:     GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGG                         ATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
genomic: GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGgtcccttttc ... ctatccgcagATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
EST: gi|33389270|gb|CA852477.1|CA852477
EST:     ACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCACTGCTGG                         ATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
genomic: ACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGgtcccttttc ... ctatccgcagATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
EST: gi|193611684|gb|FK565341.1|FK565341
EST:     GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGG                         ATTCTGCATCACTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
genomic: GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGgtcccttttc ... ctatccgcagATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
EST: gi|12773323|gb|BG238250.1|BG238250
EST:     GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGG                         ATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
genomic: GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGgtcccttttc ... ctatccgcagATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
EST: gi|4306078|gb|AI443853.1|AI443853
EST:     GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGG                         ATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
genomic: GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGgtcccttttc ... ctatccgcagATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
EST: gi|12689436|gb|BG155833.1|BG155833
EST:     GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGG                         ATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA
genomic: GACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGgtcccttttc ... ctatccgcagATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGA