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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCGCCAAATACAAGCTCGTTTTCTTAGGCGATCAATCGGTCGGCAAAACCAGCATCATCACTCGCTTCATGTATGACAAATTCGACACTAACTATCAGgtctttattttaccgatctcctttttctttttcttttttatttttaatcattcgaagatttcgttgaacgattatcaatttcaatttgactaactccatt...

Basic information

species Glycine max
transcript GLYMA11G38110.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G38110.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G22290.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTCGCCAAATACAAGCTCGTTTTCTTAGGCGATCAATCGGTCGGCAAAACCAGCATCATCACTCGCTTCATGTATGACAAATTCGACACTAACTATCAGgtctttattttaccgatctccttt-ttctttttcttttttatttttaatcattcgaagatttcgttgaacgattatcaatttcaatttgactaactccatt
  | || ||||| || || || |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||| | ||| |||||      |  | | |  ||  |  |||| ||||| | || ||  |  |   |   | |||  ||   |   ||| |  |||  ||      |||  ||||
ATTAGCGAAATATAAACTGGTGTTCTTAGGAGATCAATCTGTCGGCAAAACCAGCATCATCACTCGTTTCATGTATGATAAGTTCGACACAACCTACCAGgttaaatctaaaaccacatcgatgattctgtttctctgtttttgctgtttgatttta-attctgtctcatttttaacgtttttgatcatcgaaacaacatt

upper sequence: GLYMA11G38110.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G39890.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTCGCCAAATACAAGCTCGTTTTCTTAGGCGATCAATCGGTCGGCAAAACCAGCATCATCACTCGCTTCATGTATGACAAATTCGACACTAACTATCAGgtctttattttaccgatctcctttttctttttcttttttatttttaatcattcgaagatttcgttgaacgattatcaatttcaatttgac-taactccatt--
| | || || |  || || || |||||||| || ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |  || ||||| ||||    || |||  | ||    | |||  ||| |   |||||    |         |    |     | |   ||||  |||    |   |  ||   
TTTGGCAAAGTTTAAACTGGTGTTCTTAGGAGACCAATCTGTCGGAAAAACCAGCATCATCACTCGTTTCATGTATGACAAATTCGACACCACGTACCAGgtatttac---acagattcctttcacttgttttgtttattcatttaaattcttctctgcgacaacaagtttcttttgttttcgtttttttattgtttgatctg

upper sequence: GLYMA11G38110.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTCGCCAAATACAAGCTCGTTTTCTTAGGCGATCAATCGGTCGGCAAAACCAGCATCATCACTCGCTTCATGTATGACAAATTCGACACTAACTATCAGgtc-------tttatttta-ccgatctcctttttctttttcttt--tttatttttaatcat-tcgaagatttcgttg----aacgatt--atcaatttcaatttgacta--actccatt------------------------------------------------------
  | || || ||||||||||| ||| | || |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||| || |  ||||||||        ||| || || || |||||  |     ||   |||  |  ||| |   | |  || | |||   ||||    || || |  ||||  ||||   |  |||  |   |||                                                       
ATTAGCAAAGTACAAGCTCGTGTTCCTTGGAGATCAATCCGTTGGCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACTTATCAGgttggatcattttcttctatcccatctcgatcaaaattaattttgatccattgtctgtgagatccacgatcctgttgctgtaatgaatggatcagattcagaattgctagaaactcatagcattgtgttcattggatcaaattctgatattagttatggtgtttttgttgcag

upper sequence: GLYMA11G38110.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S288_43V6.1 (Physcomitrella patens), 5'ss of exon 1
TCTCGCCAAATACAAGCTCGTTTTCTTAGGCGATCAATCGGTCGGCAAAACCAGCATCATCACTCGCTTCATGTATGACAAATTCGACACTAACTATCAGgtctttatttt--accgatctcctttttctttttcttttttatttttaatcattcgaagatttcgttgaacgattatcaatttcaatttgactaactccatt
 ||  | || |||||| | || ||  | || |||||    |||||||| || |||||||| ||||| |||||||||||||| || |||   |  || |||||  | | |    ||  ||   || | ||| | ||  |       |   |   |||    |   ||    || || |   ||     | || | |     | 
GCTTTCGAAGTACAAGTTGGTCTTTCTTGGTGATCAGAGCGTCGGCAAGACTAGCATCATTACTCGATTCATGTATGACAAGTTTGACCAGACGTACCAGgtaatgaatcacaacaaattctctctctctctctcgctcgctcgctcggttgctcgctc-tcctgtctttcg-ttgttccttgtgggtggattgaaaagttc