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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATAGGGGCGAGTTAAAAATTTGTGATTTTGGATTGGCTCGTCAGTATGGGAGCCCATTGAAACCATATACCCACCTTGTGGTTACTCTTTGGTACAGgtgagtcatttggttagacatgccatttttttctgtttattcatgtcactggttaatttgtatgatattcctcattatacatcaattttgttgttgtgaa...

Basic information

species Glycine max
transcript GLYMA11G37270.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G37270.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G139038_T01 (Zea mays), 5'ss of exon 2
ATAATAGGGGCGAGTTAAAAATTTGTGATTTTGGATTGGCTCGTCAGTATGGGAGCCCATTGAAACCATATACCCACCTTGTGGTTACTCTTTGGTACAGgtgagtcatttgg-----ttaga---catgccatttttttctgtttattc--atgtcact-ggttaa----tttgtatgatattcctcattatacatcaattttgttg-ttgtgaa-----
||||  | || ||||||||||| |||||||||||| || ||||||| |||||||||||||| ||||| ||||| || || || || ||| | ||||||||||  |||||  |      | |||   |    || | ||||   ||| |||  | || | |  ||| |    | ||| || |   ||  |  |  || |  | ||| |  |||||       
ATAACCGTGGTGAGTTAAAAATATGTGATTTTGGACTGTCTCGTCAATATGGGAGCCCATTAAAACCTTATACTCAACTGGTTGTGACTTTGTGGTACAGgtaggtcatcggacaacatcagattcctcagcagtgttttggttttcttctaaagttattcagttgagagttctgtttggtcaacca-aggactcacctttcttgctccttgtggctacag

upper sequence: GLYMA11G37270.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G179097_T07 (Zea mays), 5'ss of exon 2
-----------------------------ATAATAGGGGCGAGTTAAAAATTTGTGATTTTGGATTGGCTCGTCAGTATGGGAGCCCATTGAAACCATATACCCACCTTGTGGTTACTCTTTGGTACAGgtgagtcatttggttagacatgccatttttttctgtttattcatgtcactggttaatttgtatgatattcctcattatacatcaattttgttgttgtgaa
                             ||||  | || ||||||||||| |||||||||||| || ||||||| ||||| |||||||| ||||| ||||| || || || || ||| | ||||||||||  |||||                                                                                           
GGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGgtgagttaaaaatatgtgattttggactgtctcgtcaatatggaagcccattaaaaccttatactcaactggttgtgactttgtggtacaggtaggtcat-------------------------------------------------------------------------------------------

upper sequence: GLYMA11G37270.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G179097_T04 (Zea mays), 5'ss of exon 2
ATAATAGGGGCGAGTTAAAAATTTGTGATTTTGGATTGGCTCGTCAGTATGGGAGCCCATTGAAACCATATACCCACCTTGTGGTTACTCTTTGGTACAGgtgagtcatttgg-----ttaga--catgccatttttttctgtttattc--atgtcact-ggttaa----tttgtatgatattcctcattatacatcaattttgttg-ttgtgaa-----
||||  | || ||||||||||| |||||||||||| || ||||||| ||||| |||||||| ||||| ||||| || || || || ||| | ||||||||||  |||||  |      | |||  |    || | ||||   ||| |||  | || | |  ||| |    | ||| || |       |  |  ||    | ||| |  |||||       
ATAACCGTGGTGAGTTAAAAATATGTGATTTTGGACTGTCTCGTCAATATGGAAGCCCATTAAAACCTTATACTCAACTGGTTGTGACTTTGTGGTACAGgtaggtcatcggacaacatcagatcctcagcagtgttttggttttcttctaaagttattcagttgagagttctgtttggtcaaatcaaggactcacttttcttgctccttgtggctacag

upper sequence: GLYMA11G37270.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 1
ATAATAGGGGCGAGTTAAAAATTTGTGATTTTGGATTGGCTCGTCAGTATGGGAGCCCATTGAAACCATATACCCACCTTGTGGTTACTCTTTGGTACAGgtgagtcatttggttagacatgccatttttttctgtttattcatgt-cactggttaatttgtatgatattcctcatta-tacatcaattttgttgtt-gtgaa
|||||||||| ||||| || ||||||||||||||||||||||| || || |||||||| |||||||||||||| ||  | ||||||||||| |||||||||||||        ||  || ||   | |||| ||    ||    ||  ||   ||  | | |    ||      |||| | | | |  | |||| ||  ||  
ATAATAGGGGTGAGTTGAAGATTTGTGATTTTGGATTGGCTCGGCAATACGGGAGCCCTTTGAAACCATATACTCATTTGGTGGTTACTCTATGGTACAGgtgagctgg--acttgcacttgatctcttttcctaggcatatgggtgtacactttcttctctcatttaagtaaaattaatgcttgagatctgttcttcatgc-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5606905|gb|AI901003.1|AI901003
EST:     GGGAGCCCATTGAAACCATATACCCACCTTGTGGTTACTTTTTGGTACAG                         GGCTCCTGAACTTCTTCTGGGTACAAAA
genomic: GGGAGCCCATTGAAACCATATACCCACCTTGTGGTTACTCTTTGGTACAGgtgagtcatt ... ttgttttcagGGCTCCTGAACTTCTTCTGGGGACAAAA