Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGTTTTTCTTCCTCCTTCAGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaaccggcaccaaacaatgattctcagctttttcctctgaaattcgctttttagatctcatagtaacgctgtttcgttttctcttttttcttttctcag

Basic information

species Glycine max
transcript GLYMA11G37160.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723027|gb|BW668873.1|BW668873
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|209707520|gb|BW664979.1|BW664979
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|58018377|gb|CX705119.1|CX705119
EST:     CTGCTTCAACC-TGCGGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CTGCTTCAACCTTGC-GGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192299836|gb|FG990073.1|FG990073
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACCCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|15285877|gb|BI469768.1|BI469768
EST:     GTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: GTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213620278|gb|DB961423.1|DB961423
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192334007|gb|FK024820.1|FK024820
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAAAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|58021552|gb|CX708293.1|CX708293
EST:     CTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213618470|gb|DB967707.1|DB967707
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213602730|gb|DB968928.1|DB968928
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192315909|gb|FK007070.1|FK007070
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|209728279|gb|BW658491.1|BW658491
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|10843191|gb|BF066504.1|BF066504
EST:     GAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: GAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192330296|gb|FK019861.1|FK019861
EST:     AGCCGTTGCTCCGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|209696456|gb|BW655663.1|BW655663
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|298163726|gb|HO012459.1|HO012459
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192300828|gb|FG989725.1|FG989725
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|298191987|gb|HO036069.1|HO036069
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|26059831|gb|CA802745.1|CA802745
EST:     GACGCCGCAGCCATG                         GCGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: GACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|9986842|gb|BE660950.1|BE660950
EST:     TCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: TCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213592920|gb|DB966025.1|DB966025
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|58016113|gb|CX702855.1|CX702855
EST:     GCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: GCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213603275|gb|DB970394.1|DB970394
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213598906|gb|DB971934.1|DB971934
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192304746|gb|FG998776.1|FG998776
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|14991547|gb|BI317220.1|BI317220
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|24205425|gb|BU964678.1|BU964678
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|209697265|gb|BW675476.1|BW675476
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|192315910|gb|FK007071.1|FK007071
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213593378|gb|DB973571.1|DB973571
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|151403328|gb|EV273138.1|EV273138
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|151407792|gb|EV277607.1|EV277607
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|7685510|gb|AW756158.1|AW756158
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213611894|gb|DB964814.1|DB964814
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|58014186|gb|CX700928.1|CX700928
EST:     CTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: CTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
EST: gi|213599443|gb|DB970377.1|DB970377
EST:     AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATG                         GTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT
genomic: AGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaacc ... cttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTAGTTTTTCTTCCTCCTTCAGCCGTTGCTCTGCTTCAACCTTGCGGAAGAAGAAGACGCCGCAGCCATGgtaagtaaccggcaccaaacaatgattctcagctttttcctctgaaattcgctttttagatctcatagtaacgctgtttcgttttctcttttttcttttctcag

- - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG