Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCTTTTTTCCACAACCTTGAATGTTTACCGCCCCGCCGGATAAGGAGAAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGGgtaaaaccccctctaataatctcattccttcacttctaataattctcttcgattcatcatcttccttagctacgcttttgaaccctagcccaatcgatct...

Basic information

species Glycine max
transcript GLYMA11G36990.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316561|gb|GR828098.1|GR828098
EST:     AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGG                         GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
genomic: AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGGgtaaaacccc ... ggttttgcagGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
EST: gi|193390296|gb|FK354928.1|FK354928
EST:     AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGG                         GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
genomic: AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGGgtaaaacccc ... ggttttgcagGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
EST: gi|9899202|gb|BE608100.1|BE608100
EST:     AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGG                         GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
genomic: AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGGgtaaaacccc ... ggttttgcagGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
EST: gi|298190731|gb|HO032852.1|HO032852
EST:     AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGG                         GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
genomic: AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGGgtaaaacccc ... ggttttgcagGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
EST: gi|193409709|gb|FK375015.1|FK375015
EST:     AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGG                         GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
genomic: AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGGgtaaaacccc ... ggttttgcagGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
EST: gi|192328242|gb|FK020461.1|FK020461
EST:     AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGG                         GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
genomic: AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGGgtaaaacccc ... ggttttgcagGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
EST: gi|254331208|gb|GR845787.1|GR845787
EST:     AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGG                         GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
genomic: AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGGgtaaaacccc ... ggttttgcagGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
EST: gi|13312501|gb|BG406152.1|BG406152
EST:     AAGGAGAAGGAGGATTTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGG                         GTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
genomic: AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGGgtaaaacccc ... ggttttgcagGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG
EST: gi|192328139|gb|FK022848.1|FK022848
EST:     AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGG                         GTTGATAACAGAAATTCCTCAACCACCAAGCGTGCTAGGACTGATG
genomic: AAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGGgtaaaacccc ... ggttttgcagGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATTCTTTTTTCCACAACCTTGAATGTTTACCGCCCCGCCGGATAAGGAGAAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGGgtaaaaccccctctaataatctcattccttcacttctaataattctcttcgattcatcatcttccttagctacgcttttgaaccctagcccaatcgatct

- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttcac