Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCCAGCTCCAAGTGTGCTACTGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcataaattatatatgctcttcattttgattttgattatattattggtccatttaggatctctaatcatacttagtgttattgattcag

Basic information

species Glycine max
transcript GLYMA11G35030.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g44630.3 (Oryza sativa), 5'ss of exon 1
AGGTCCAGCTCCAAGTGTGCTACTGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgta---tcatcataaattatatatgctcttcattttgattttgattatattattggtccatttaggatctctaatcatacttagtgttattgattcag-----
| ||||  ||||||||| || || || ||||| || ||||| || ||| ||||||| |||||||||||||| ||||| |||||||| || |||||||| |||    |||   |   ||   |     |  ||  || |   |  | |  |  |        | | ||| |     | |  || || ||  |  || |      
AAGTCCTCCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagttcactctcctttggcttcctcccccaccttcaagatc-tcaagtcttcaactttgtcatgatttt--gccttggtttgtcttgctagttgatactta

upper sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G174807_T01 (Zea mays), 5'ss of exon 1
AGGTCCAGCTCCAAGTGTGCTACTGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcat-cataaattatatatgctcttcattttgattttgat---tatattattggtccatttaggatctctaatcatacttagtgtta-ttgattcag----------------------------------------------------------------------------
| ||||| ||||||||| || || || ||||| || ||||| || ||| ||||||| |||||||||||||| ||||| |||||||| || |||||||| |||| | | ||            |  |  |  ||||  || |     | | |  ||  |||  |      ||    || |  || |||  |  || ||                                                                               
AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCCGgtaccgtacacgccgcccgcccggccgcctctttggcttcgtcctctgtttctttcttcctctgcttgccttgcctcgtcgtttgtgcaaactggtttgctgatgtttctctctctctctctctctctctctctctctctctctctctctctctctctctcttctcgcaactgcag

upper sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G174807_T03 (Zea mays), 5'ss of exon 1
AGGTCCAGCTCCAAGTGTGCTACTGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcat-cataaattatatatgctcttcattttgattttgat---tatattattggtccatttaggatctctaatcatacttagtgtta-ttgattcag
| ||||| ||||||||| || || || ||||| || ||||| || ||| ||||||| |||||||||||||| ||||| |||||||| || |||||||| |||| | | ||            |  |  |  ||||  || |     | | |  ||  |||  |      ||    || |  || |||  |  || ||   
AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCCGgtaccgtacacgccgcccgcccggccgcctctttggcttcgtcctctgtttctttcttcctctgcttgccttgcctcgtcgtttgtgcaaactggtttgc

upper sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
AGGTCCAGCTCCAAGTGTGCTACTGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcataaattatatatgctcttcattttgattttgattatattattggtccatttaggatctctaatcatacttagtgttattgattcag-------
| ||||| ||||||||| || || || ||||| || ||||| || ||| ||||||| || ||||||||||| ||||| |||||||| || |||||||| ||| |  |||    |  |   | |  | | | ||| |  || |  |    |   |        ||  | | ||  |  | ||  ||||| |   |        
AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtct-gtcagctctccttccttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgat-gtgatgagctttattaacctactgcgatt

upper sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 1
lower sequence: AC209208.3_FGT002 (Zea mays), 5'ss of exon 1
AGGTCCAGCTCCAAGTGTGCTACTGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgt-atcatcataaattatatatgct----cttcattttgattttgattatattattggtccatttaggat---ctctaatcatacttagtgttattgattcag
| ||||| ||||||||| || || || ||||| || ||||| || ||| ||||||| || ||||||||||| ||||| |||||||| || |||||||| ||| | |    |   || |   |||     |||| | |   |   ||||  ||     |  | |||   ||   ||  ||| || | |     | ||| |    
AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGAATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagctctctcccttcttgctgccgtggcttcttctatttccagattccatgggacgaactttttaaatttactgcaattattcgttacacttttggtc---

upper sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S305_12V6.1 (Physcomitrella patens), 5'ss of exon 1
AGGTCCAGCTCCAAGTGTGCTACTGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtat------catcataaattatatatgctcttcattttgattttgattatattattggtccatttaggatctctaatcatactta-gtgttattgattcag--------------------------------------
|    | ||      || ||    || ||||||||||| ||||| ||||||||||| |||||||| ||| | ||||| |||||||| ||||| || || ||||       |       |||  | | |   | ||   ||||  || |||| | ||   |   ||   |||||      ||  ||| |||    || |                                          
AATCGCGGCGATGCCTGCGCGGGGGTCGGCATTCAAGGAATTGCGTGGGCCTTCGGCGGCATGATATTCACCCTCGTCTACTGCACCGCTGGAATTTCAGgtaaagaatgcgctgctcatttcacaagtattgcagaatgatgatgtttatgtgatct-tggtttccagatcttcgtagatttttatgtgagggtggtctgatgatgagcttgcccggggtttgatgatgatggcttaag

upper sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ18960 (Selaginella moellendorffii), 5'ss of exon 1
AGGTCCA--GCTCCAAGTGTGCTACTGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcataaattat---atatgctcttcattttgattttgattatattattggtccatttaggatctctaatcatacttagtgttattgattcag--
  ||| |  || |||  ||   |   || ||||| || ||||| || ||||| || || ||||||||||| |||||||| |||||||||||||| ||||| |||| ||  || | || |    | | || |    | || | ||     ||   || || | |     |  |    ||     | ||||| |      |   
--GTCGATCGCACCAGCTGCCTTGGAGTGGGCATCCAGGGCATCGCGTGGGCTTTTGGGGGCATGATCTTTGCTCTCGTCTACTGCACTGCTGGAATCTCAGgtaccaagatgagtttttttgtttcctgtgaggtgtggtgttcgagctaaagtttgttcttgcgaaactttatctcgggtgtggtgttgtcccgaaactt

upper sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ11572 (Selaginella moellendorffii), 5'ss of exon 1
AGGTCCA--GCTCCAAGTGTGCTACTGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcataaattatata---------------tgctcttc---attttgattttgattatattattggtcc---atttaggatct---ctaatcatactt-----agtgttattgattcag---------------------------------------------------------------
  ||| |  || |||  ||   |   || ||||| || ||||| || ||||| || || ||||||||||| |||||||| ||||||||||| || ||||| |||| ||  || | || | |                || ||||    |  || |  | |  | |  | |||  ||   | || ||  ||   |||   | | ||     |||  || || | |||                                                               
--GTCGATCGCACCAGCTGCCTTGGAGTGGGCATCCAGGGCATCGCGTGGGCTTTTGGAGGCATGATCTTTGCTCTCGTCTACTGCACTGCCGGAATCTCAGgtaccaagatgagttttttggtgttcgagctaaagtgttcttgcgaaactttacctcgggtgtggtgttgtcccgaaactttggtgctgttctagctaaagtttcgcgagttctagtgttccagcgaaagttttcgtgcgagactggaaaccatagctaaaagcttgacatgttttgtttttctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8827078|gb|BE210808.1|BE210808
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|254315524|gb|GR825333.1|GR825333
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|4291483|gb|AI441768.1|AI441768
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAAGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|209703049|gb|BW656082.1|BW656082
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|4395738|gb|AI494735.1|AI494735
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACCATAAACCCG-CTGTGACATTCGGATTGT-CTTGGCGAGGAAA
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACAC-ATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAA
EST: gi|9898746|gb|BE607714.1|BE607714
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|4313534|gb|AI460653.1|AI460653
EST:     TTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: TTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|4397323|gb|AI496320.1|AI496320
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|213619856|gb|DB969520.1|DB969520
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GNGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|151407326|gb|EV277141.1|EV277141
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|7588404|gb|AW704200.1|AW704200
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|12774124|gb|BG239051.1|BG239051
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTT-TTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|8826519|gb|BE210249.1|BE210249
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|4293184|gb|AI437869.1|AI437869
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|209715213|gb|BW668541.1|BW668541
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
EST: gi|14125559|gb|BG789997.1|BG789997
EST:     CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTG                         GGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT
genomic: CTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcat ... attgattcagGGGGACACATAAACCCGGCTGTGACATTCGGATTGTTCTTGGCGAGGAAAT