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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATTTCTAATGCCATTACTAATCTCTGCGgtatgctttccatcttgcaaacacttgcataggctcattatgtaattgagaagctgtttacttagtttgtctatgttggcaaatagttcaaaattttgaattttctgttctggttttaaatttgagttttataacttattcaagtttggattatttgcaacttgtag

Basic information

species Glycine max
transcript GLYMA11G34690.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G34690.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G55660.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATTTCTAATGCCATTACTAATCTCTGCGgtatgctttccatcttgcaaacacttgcataggctcattatgtaattgagaagctgtttacttagtttgtctatgttggcaaatagttcaaaattttgaattttctgttctggttttaaatttgagttttataacttattcaagtttggattatttgcaacttgtag
|||||  | || || ||||||||||||||||| ||||| ||||||||  |||| |||||  |||||||||| ||||||||||||||||| |||||||  ||||    ||  || | | |    | | | |  | |   | | |  |||| |   |  ||   |  |  |||||  ||     ||  |||||  |  ||||                                                                   
GAGAGAATGGCGAAGTTGTTGCTTGGTGAAGACATGTCTGGTTCTGGTGAAGGAGTTTGTCCTGCTTTGGCTATTTCTAATGCCATTACCAATCTCTATGgtag---ttttatttcgaagttccatactttagtttgatgtttctttgatatcttactttacttatgagtctaactt--ttgat--ttcaatgtgatgaaag-----------------------------------------------------------------

upper sequence: GLYMA11G34690.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G05940.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATTTCTAATGCCATTACTAATCTCTGCGgtatgctttccatcttgcaaacacttgcataggctcattatg-taattgag--aagctgtttacttagtttgtctatgttggcaaatagttcaaaattttgaattttctgttctggttttaaatttgagttttataacttattcaagtttggattatttgcaacttgtag
||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| || || || ||||| || || || || ||||| || |||||||| |||| |  ||  |    |   |  ||  | |  | |  |||   |  ||||   ||  |||| | || | | || | |  |   |                                                                                      
GAGAGATTTGCAAAGTTGTTACTTGGTGAAGATATGTCAGGTTCTGGTAAAGGTGTGTGTACGGCTTTAGCTATCTCCAACGCCATAACAAATCTCTGTGgtaagtcttaaaaaaagacgaagctatcttgtgtttgttaaaatgcttgaaccaaagtgttgaatttgat-gtttcttcttttag-------------------------------------------------------------------------------------

upper sequence: GLYMA11G34690.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g02710.t01 (Vitis vinifera), 5'ss of exon 2
GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATTTCTAATGCCATTACTAATCTCTGCGgtatgctttccatcttgcaaacacttgcataggctcattatgtaattgagaagctgtttacttagtttgtctatgttggcaaatagttcaaaattttgaattttctgttctggttttaaatttgagttttataacttattcaagtttggattatttgcaacttgtag
||||||||| | ||| |||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||| ||||| || || ||||| |||||| || ||||  |||  ||     ||  |  |  |  || |  | || |  ||   |||  ||  |   | | |  | |||| |  ||  |  |||  | | |||  |      | ||                                                 
GAGAGGTTTTCGAAACTGTTGCTTGGTGAAGACATGTCAGGGTCTGGAAAAGGGGTTTGTACAGCTTTGGCCATTTCAAATGCTATCACCAATCTTTGCGgtgtgttttctctctctca-----ttctaaggctttgtttttcagttaattagtc-ttttttttttggctttttaattgcaattcatttca--tttccattattccatgtcatctatag------------------------------------------------

upper sequence: GLYMA11G34690.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S58_274V6.1 (Physcomitrella patens), 5'ss of exon 3
GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATTTCTAATGCCATTACTAATCTCTGCGgtatgctttccatcttgcaaacacttgcataggctcattatgtaattgagaagctgtttacttagtttgtctatgttggcaaatagttcaaaattttgaattttc-tgttctggttttaaatttgagttttataacttattcaagtttggattatttgcaacttgtag
||||||||||||||| | ||||||||||||||||||||||||   || |||||||||||||| || ||||| || || ||||| || || ||| | |  |||         |   |  || |  || |       | | |||      | |   |||||  ||    |||  |       ||  | ||     || | ||| ||  ||| | | ||||   |   ||                                         
GAGAGGTTTGCAAAACTATTGCTTGGTGAAGATATGTCAGGTGGGGGCAAAGGGGTTTGCACAGCGTTGGCTATATCGAATGCAATCACAAATTTGTCAGgtg--------aaaatcaaagctattac-------cgtaatgg---caatagattgtttgtttt-catgttgaaagcaagaatgattttcgcgttgtaaatattaatgtccagatttttgttcacag-----------------------------------------