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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTTCTCAGATTGGTCTCAATGTCTTCCGTTCCTCCTTCCCAACCCTTCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTgtaacatcttatattctctcacctttttacgcttctttttttgtttgttcgattgatattaaaaattactatcacataaacagataaatgatgtgcatga...

Basic information

species Glycine max
transcript GLYMA11G33700.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296135|gb|FG989495.1|FG989495
EST:     CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACT                         GCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
genomic: CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTgtaacatctt ... gtcttttcagGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
EST: gi|209722386|gb|BW665859.1|BW665859
EST:     CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACT                         GCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
genomic: CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTgtaacatctt ... gtcttttcagGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
EST: gi|213609040|gb|DB957428.1|DB957428
EST:     CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACT                         GCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
genomic: CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTgtaacatctt ... gtcttttcagGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
EST: gi|7147501|gb|AW509423.1|AW509423
EST:     CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACT                         GCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
genomic: CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTgtaacatctt ... gtcttttcagGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
EST: gi|209708272|gb|BW678644.1|BW678644
EST:     CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACT                         GCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
genomic: CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTgtaacatctt ... gtcttttcagGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
EST: gi|151403447|gb|EV273257.1|EV273257
EST:     CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACT                         GCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
genomic: CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTgtaacatctt ... gtcttttcagGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
EST: gi|192299879|gb|FG990087.1|FG990087
EST:     CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACT                         GCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
genomic: CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTgtaacatctt ... gtcttttcagGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
EST: gi|13789768|gb|BG652359.1|BG652359
EST:     CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACT                         GCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
genomic: CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTgtaacatctt ... gtcttttcagGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
EST: gi|14011917|gb|BG726839.1|BG726839
EST:     CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACT                         GCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
genomic: CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTgtaacatctt ... gtcttttcagGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
EST: gi|298165886|gb|HO008857.1|HO008857
EST:     CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACT                         GCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
genomic: CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTgtaacatctt ... gtcttttcagGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
EST: gi|12691145|gb|BG157481.1|BG157481
EST:     CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACT                         GCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
genomic: CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTgtaacatctt ... gtcttttcagGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
EST: gi|209705734|gb|BW661402.1|BW661402
EST:     CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACT                         GCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
genomic: CGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTgtaacatctt ... gtcttttcagGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
EST: gi|11688459|gb|BF596135.1|BF596135
EST:     GAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCCTCGGCGACT                         GCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT
genomic: GAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGG-CTCGGCGACTgtaacatctt ... gtcttttcagGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTT