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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGAGAAGATTCGTTGCTATGCGCTTGCTCCAGCTAGGTGTATGTCCCTCAATTTGGCCGTCAAGTATGCCAATTTCATTCATTCTATTGTTTTGCAGgttacaatctacatctacataccttacacatcaatgcttctttttttcactactttggttgttattttttattgcaaatgttagttaacaaactcaaaaa...

Basic information

species Glycine max
transcript GLYMA11G33660.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G33660.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0006g01030.t01 (Vitis vinifera), 5'ss of exon 1
CAAGGAGAAGATTCGTTGCTATGCGCTTGCTCCAGCTAGGTGTATGTCCCTCAATTTGGCCGTCAAGTATGCCAATTTCATTCATTCTATTGTTTTGCAGgttacaatctacatctacataccttacacatcaatgcttctttttttcactactttggttgttattttttattg---caaatgtt--agttaacaaactcaaaaa--------------
|| |       |  | ||||||||| | || || || || ||||||||||||||||||||||||||||| ||| || | ||||||||| |  | |||||||||      | ||| ||  |   | |    |   | | ||   ||     | |||        ||   | | |    ||| | |   ||    |    |   | |              
CAGGAGTCTCGTAAGCTGCTATGCGTTGGCCCCCGCCAGATGTATGTCCCTCAATTTGGCCGTCAAGTACGCCGATGTTATTCATTCTGTCATCTTGCAGgttcattctttcatttatttgt-taaggtgttttttcatcccattccatttccttccacatcaatccatcaatcaatcaattatctgagcctgcccttttctacatggatctgatccag