1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GACCTTTTCATTAAGAATGAAGCTTGACGTAGATGTCTTGAGATATCTCTCCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAATgtgcgtttttctttttcccctccttttaaattccggtttaaatattattttttgagccgaaattaatgaaattcttccctctgttgcag
species | Glycine max |
transcript | GLYMA11G33320.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAAT CATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAAEST: gi|14260014|gb|BG882922.1|BG882922
genomic: CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAATgtgcgttttt ... tctgttgcagCATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAA
EST: CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAAT CATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAAEST: gi|6501956|gb|AW203329.1|AW203329
genomic: CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAATgtgcgttttt ... tctgttgcagCATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAA
EST: CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAAT CATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAAEST: gi|4293428|gb|AI442046.1|AI442046
genomic: CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAATgtgcgttttt ... tctgttgcagCATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAA
EST: CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAAT CATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAA
genomic: CCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAATgtgcgttttt ... tctgttgcagCATGAAATCGTACCCACTGAACTCATAGACCGAATTGCGCGTCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCTTTTCATTAAGAATGAAGCTTGACGTAGATGTCTTGAGATATCTCTCCAAAGATGATTTTAGGGTTCTCACTGCTGTTGAATTGGGCATGCGGAATgtgcgtttttctttttcccctccttttaaattccggtttaaatattattttttgagccgaaattaatgaaattcttccctctgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT