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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGCTGGATTGGCATTCAAAAGAAAGTGGCAAAACAGAAGGAAACAAGAGGGAAAACCTTTTGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtacatacacttcaaaacatttttattaatttttcaagagcattgtttgttgagtaatatagtatggaactaatcagagttttaattgattaattatgtgtgttcag

Basic information

species Glycine max
transcript GLYMA11G33280.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G33280.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0011g06600.t01 (Vitis vinifera), 5'ss of exon 3
GTTAGCTGGATTGGCATTCAAAAGAAAGTGGCAAAACAGAAGGAAACAAGAGGGAAAACCTTTTGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtacatacacttcaaaacatttttattaatttttcaagagcattgtttgttgagtaatatagtatggaactaatc---agagttttaa--------ttgattaattatgtgtgttcag-----------------------------------------------------------
| |||| ||  | || ||||| || |||||||| ||||  || ||    ||||| || |||| |||||| |||||||| |||||||| || || ||||||||||||| ||  |    | |     |    | ||  ||   |||| || || | |  |      |||    ||||    |  || |||        || |     ||  ||  ||  |                                                           
GCTAGCAGGGCTTGCTTTCAAGAGGAAGTGGCAGAACAAGAGAAAGGCTGAGGGGAAGCCTTATGACAAGCCCAACATCGTCACTGGTGCTAATGTTCAGgtacata-acgccctggcttcaccctc--ctctttgagcatattgcttctt-acttgtgagccttgggctaaatccatgggcttctaagcccgggcttaaacttctacatgattttggccctcaaacggctttccatggtggttgggattattaatcatatgcatttgtggatatag

upper sequence: GLYMA11G33280.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S8_163V6.1 (Physcomitrella patens), 5'ss of exon 2
GTTAGCTGGATTGGCATTCAAAAGAAAGTGGCAAAACAGAAGGAAACAAGAGGGAAAACCTTTTGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGgtacatacacttcaaaacatttttattaatttttcaagagcattgtttgttgagtaatatagtatggaactaatcagagttttaat-tgattaattatgtgtgttcag-----
| | || || |||||||||||  | ||||||||        | ||     | ||   ||| ||||||||||||||||| || ||||| ||||||||||| ||   | ||||    || |  ||| || ||||           ||  |||||||| ||  ||  |     |  || |   |||  | | | |  | |   || |  |      
GCTGGCAGGGTTGGCATTCAAGCGCAAGTGGCAGCTTGAGCGAAAGGCCAAAGGGTTACCCTTTGACAAACCCAACATGGTGACTGGCGCCAACGTTCACgtttgttcact----aagacctttcttgatttc---------ctggatgttgagtgattaagcttcttcttcttctgcaatttggtgtaagttttcagtggtttctaaacccc