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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCCTCCACCGCCTGGTCGAATCCGCCGCCGCTCAGTTAGTCTCCGCCGGCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgttcgatcactctcccaacaaagccaacatttatcaataataataataaaaaagacaaacaacgtaggaaagttataacattataactttgtattttctgtttgatttcag

Basic information

species Glycine max
transcript GLYMA11G31310.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G31310.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os04g58710.1 (Oryza sativa), 5'ss of exon 1
CCGCCTCCACCGCCTGGTCGAATCCGCCGCCGCTCAGTTAGTCTCC---GCCGGCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgttcgatcactctcccaacaaagccaacatttatcaataataataataaaaaagacaaacaacgtaggaaagttataacattataactttgtattttctgtttgatttcag
    ||| ||   || |||||  |||| ||||| |   | | | ||   || |||||    |||||| |||||||||| ||| |||||||||||||| |||||||   | |||    |  ||| |  |      |||||    | |  || |   ||      |   |      ||| |     | |   |||| |                  
---GCTCGACGCGCTCGTCGACGCCGCGGCCGCGCGCCTCGCCGCCGATGCGGGCGTGCTCCCCGGCCACGTCGTCGCGCTCGCCTTCCCCAACACCGTCGAGgta-aagcaccagtc--acagaagctgttgatatca-cggtgacgatcatcgagctgctgatgctgatctggttcttg---tgtgtttttgcag-----------------

upper sequence: GLYMA11G31310.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G333861_T01 (Zea mays), 5'ss of exon 1
CCGCCTCCACCGCCTGGTCGAATCCGCCGCCGCTCAGTTAGTCTCC---GCCGGCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgttcgatcactctcccaacaaagccaacatttatcaataataataataaaaaagacaaacaacgtaggaaagttataacattataactttgtattttctgtttgatttcag
   |||| ||   || |||||  | || ||||| |   | | | ||   || || ||    || ||| |||||||||| ||| |||||||||||||| |||||||||| || |  ||     ||  | | |  |   | |     |     | |    ||      || || |  | |      |   |    |   | | |||          
---CCTCGACGCTCTCGTCGACGCGGCGGCCGCACGACTCGCCGCCGACGCTGGAGTTCTCCCGGGCCACGTCGTCGCGCTCTCCTTCCCCAACACCGTCGAGgttcg-tctccttctttcgaattcgatcggtgcgcgacgcagagccccagagtagcagga---gtcgggacctgacgcgcgtgcgaacgcgatctgtatgtaca-------

upper sequence: GLYMA11G31310.2 (Glycine max), 5'ss of exon 1
lower sequence: AT3G48990.1 (Arabidopsis thaliana), 5'ss of exon 1
CCGCCTCCACCGCCTGGTCGAATCCGCCGCCGCTCAGTTAGTCTCCG---CCGGCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgt---tcgatcactctcccaaca----aagccaaca--tttatcaataataataataaaaaagacaaacaa-cgtaggaaagttataacattataac-tttgtattttctgtttgatttcag-----------------------------------------------------------------------
    || |||   ||  |||||  ||||||  | |   | |||||||   | ||  ||||||||||||| ||||| || ||||||||||| |||||| |||||||   |  |    | | |  | |     |   || |  ||  |   |  |  |  |      |   || || |  | |  |   | ||  |   ||  | ||||  |    | | | || ||                                                                       
---TCTTCACGATCTAATCGAACGCGCCGCTTCACGCCTTGTCTCCGACGCTGGAATCAAACCCGGCGATGTCGTTGCTCTCACCTTCCCTAACACCGTCGAGgtattttaagaggttttcatatatttcgatttaaaagcttcgtttctggttttgttttgcgtgctgaagaatcacatgggaagcagaatttatgaatatctgtaaatcgcttcttaattgagaaattttgatttccggattcagatgatttttttggatgaatttggttttgattttttttttttgttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707964|gb|BW657046.1|BW657046
EST:     GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAG                         TTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
genomic: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgttcgatcac ... ttgatttcagTTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
EST: gi|7283384|gb|AW595993.1|AW595993
EST:     GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAG                         TTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
genomic: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgttcgatcac ... ttgatttcagTTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
EST: gi|209719642|gb|BW651042.1|BW651042
EST:     GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAG                         TTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
genomic: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgttcgatcac ... ttgatttcagTTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
EST: gi|37996963|gb|CF808552.1|CF808552
EST:     GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAG                         TTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
genomic: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgttcgatcac ... ttgatttcagTTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
EST: gi|14125913|gb|BG790351.1|BG790351
EST:     GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAG                         TTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
genomic: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgttcgatcac ... ttgatttcagTTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
EST: gi|209713576|gb|BW679326.1|BW679326
EST:     GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAG                         TTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG
genomic: GCGTCAAACCCGGCGACGTCGTCGCCCTCACCTTCCCCAACACCATCGAGgttcgatcac ... ttgatttcagTTTGTAGTCATGTTCCTAGCCGTCATTCGGGCTCGAGCCACAGCCGCGCCG