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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGACGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGgtattttttggagtttgattttctttgaatttgtaataaaatctcttcaccatgtaattgctgaacatcatacaaactggcatgtgaattgcag

Basic information

species Glycine max
transcript GLYMA11G31270.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G31270.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os07g48200.1 (Oryza sativa), 5'ss of exon 5
TTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGACGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGgtattttttggagtttgattttctttgaatttg--------taataaaatctcttcaccatgtaattgctgaacatcatacaaactggcatgtgaattgcag
||  || |||||  | || ||  | |||||||||||  | || |||||||| ||||| || || || || |||||||| |||||||||||||| |||||||||||| |      |  || | ||  | ||        ||||||||| |        |    |   |    ||    |    | | ||   | |  |  
TTCAAATTCCACCATTGTCCCCCTGTTTGAGAAGGTTCTAAGCGCCAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTACCAAAAGCCTGTGCGGAGgtatttttttgttcacaaccttttgtggttctgcctcctgttaataaaattttagtgttgttacctcattactgatttatcgtttttgtatcatattccc--

upper sequence: GLYMA11G31270.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G172621_T01 (Zea mays), 5'ss of exon 5
TTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGACGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGgtattttttgga---gtttgattttctttgaatttgtaataaa-atctcttcaccatgtaattgctgaacatcataca-aactggcatgtgaattgcag-
||  || |||||  | || ||||| |||||||||||  ||||||| ||||| ||||| || || || || |||||||| |||||||| ||||||||||||  ||  | |   |||||  |  |||| | | |||  | |  || | ||    || |   | |  ||  |  |    ||   ||||   ||       
TTCAAATTCCACGATTGTTCCATTGTTTGAGAAGGTCCTGAGTGCGAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCTGAGgtaacttcagcatttgtttgggtccctttaagtatgtttttattatatattgctgatttgccttcaaaaagttgtttggaaagagcatcaaaagcatttg

upper sequence: GLYMA11G31270.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G30470.1 (Arabidopsis thaliana), 5'ss of exon 5
TTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGACGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGgtattttttggagtt---tgattttctttgaatttgtaataaaatctcttcaccatgtaattgctgaacatcatacaaactggcatgtgaattgcag
|||||| |  |   | || ||  | ||||||||     | ||||||||||| || ||||| ||||| ||||| ||||| |||||||||||||| ||||||  |||   | |    || |  | | |    ||||  |  ||    ||      || ||  ||||      |    | ||| || |         
TTTGAATTTGAACATTGTACCTCTCTTTGAGAAAACTCTTAGTGCCAGTGATGCTGGTCGCATTGGTCGTCTAGTTCTTCCAAAAGCCTGTGCAGAGgtaaatttcccattcctatggtgatgtcttttcttgtccttgaaatattttgtagagttatgactga----tgtctgcattggtatatag-------

upper sequence: GLYMA11G31270.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 5
TTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGACGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGgtattttttggagtttgattttctttga-------atttgtaataaaatctctt-caccatgtaattgctgaacatcatacaaactg-----gcatgtgaattgcag----------
|||||| |||||  | ||||||||||| ||||||||  ||||||| ||||| || ||||||||||| ||| | || ||||||||||| |||||||| |||  ||||  |   |  |  || |  |        ||| |  ||   |  |||     || || ||  || |  |  | |   ||         | | || || |           
TTTGAATTCCACCATTGTGCCATTATTCGAGAAGGTTCTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTTTGGTCCTCCCAAAAGCATGTGCTGAAgtaagttttcaaaagtagtcatcctcaatacctttgtttcttgtatgctagcttgtgttatttattttgtggaggtttttcttccttttcatatgtataaactgtaagtcaatacag