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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGCTTTCCATGACCGTCTCCGCCGGATCTCAGCCTTCTCTCCGCGACGCTCTGTTCGCCGATTACAAGGCCTCCACTTCATTCCTCTTCCCCGGCCAGgtaaactcccccttcctcaaaacgacatcgtttggaatttcgaattaatgaagaaaaaaaaacacacacaaacacaagtttttgtgaatgtaatgtttctgtgattgcag

Basic information

species Glycine max
transcript GLYMA11G29490.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G29490.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g18590.1 (Oryza sativa), 5'ss of exon 1
TAGGCTTTCCATGACCGTCTCCGCCGGATCTCAGCCTTCTCT---CCGCGACGCTCTGTTCGCCGATTACAAGGCCTCCACTTCATTCCTCTTCCCCGGCCAGgtaaactcccccttcctcaaaacgacatcgtttggaatttcgaattaatgaagaaaaaaaaacacacacaaacacaagtttttgtgaatgtaatgtttctgtgattgcag
        |      ||| |||  ||||||  ||    |  |   |  |||||| || |||||||| |||||| || ||||  ||||||||||||||||||||||||       |   | |||   | |  | | |   |   || |  |  ||    |        ||| || | |  | |||  |     | | ||||    || |     
---CTCGGCGGCCGGCGTGTCCCTCGGATCGGAGGTGGCGGTGGGCTCCGACGCGCTCTTCGCCGACTACAAGCCCACCACCGCATTCCTCTTCCCCGGCCAGgtaa-------cgagcacaagggggctgcttctcttagcacgtagcacagacagtacttgtgtccacgcatataggaatttgggctcccg-attgttggaatggtgag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18711271|gb|BM522576.1|BM522576
EST:     CTCTGTTCGCCGATTACAAGGCCTCCACTTCATTCCTCTTCCCCGGCCAG                         GGTGCTCAAGCTGTTGGAATGGGGAAAGAAGCTCAGAATGTGCCTACTGCT
genomic: CTCTGTTCGCCGATTACAAGGCCTCCACTTCATTCCTCTTCCCCGGCCAGgtaaactccc ... gtgattgcagGGTGCTCAAGCTGTTGGAATGGGGAAAGAAGCTCAGAATGTGCCTACTGCT
EST: gi|37997155|gb|CF808744.1|CF808744
EST:     CTCTGTTCGCCGATTACAAGGCCTCCACTTCATTCCTCTTCCCCGGCCAG                         GGTGCTCAAGCTGTTGGAATGGGGAAAGAAGCTCAGAATGTGCCTACTGCT
genomic: CTCTGTTCGCCGATTACAAGGCCTCCACTTCATTCCTCTTCCCCGGCCAGgtaaactccc ... gtgattgcagGGTGCTCAAGCTGTTGGAATGGGGAAAGAAGCTCAGAATGTGCCTACTGCT