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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGTCTCTCAAGATGGAGAATCACAAGCTCACAGGGGACCTTGTTCCTCACGTTTATGGCTCTGTTCCTCTCGTGGGTTCTTGGGATCCTTCCAAAGCTgtaattttgatccctaaccttttcttcctttggttcgtgtgttactgggtgtgtcttccttttcgttgtttctcattgcttatatgggttttggtgttag

Basic information

species Glycine max
transcript GLYMA11G27870.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G27870.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 1
CGTGTCTCTCAAGATGGAGAATCACAAGCTCACAGGGGACCTTGTTCCTCACGTTTATGGCTCTGTTCCTCTCGTGGGTTCTTGGGATCCTTCCAAAGCTgtaat------tttgatcccta----accttttcttcctttggttcgtgtg---ttactgggtgtgtc--ttccttttcgttgtt-tctcattgcttatatgggttttggtgttag
||| || ||||| ||||| ||    ||| |   ||| || ||   |||||| || ||||||||| |||||||| | ||||| |||||||||||||||||||| |       ||||||   |     | ||| |    ||||  |||   |    | |  |||  | |   || | ||||   ||  |||  |||   ||      ||   |   ||
CGTTTCACTCAAAATGGAAAACTCTAAGGTTGAAGGAGAGCTCACTCCTCATGTCTATGGCTCTCTTCCTCTCATCGGTTCCTGGGATCCTTCCAAAGCTgtgagcatctgtttgatttttgttttatcttcttcgtctttccttccgattcattcatcgggaattttgattgcgtttctccgtcgtcttgttgtcaattaattcttctttaacag

upper sequence: GLYMA11G27870.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 1
CGTGTCTCTCAAGATGGAGAATCACAAGCTCACAGGGGACCTTGTTCCTCACGTTTATGGCTCTGTTCCTCTCGTGGGTTCTTGGGATCCTTCCAAAGCTgtaattttgatccctaaccttttcttcctttggttcgtgtgttactgggtgtgtcttccttttcgttgtttctcattgcttatatgggttttggtgttag
 || ||  | || ||||||||| ||||||||| ||| || ||  | ||||||||||| ||||| || |||||||| || ||||||||| |||| ||||||||| | |    | |||     || |   |||| ||| || |  | || ||   |       ||   | | | | |||| ||  ||  | || |       
TGTATCCTTGAAAATGGAGAATTACAAGCTCAAAGGAGAACTCATCCCTCACGTTTACGGCTCCGTCCCTCTCGTCGGCTCTTGGGATTCTTCTAAAGCTgtattctcccgctctatatgcttgtctgtttgtttcttgcg--attgagttatttgcatggtttaatttgtttgattg-ttgaatatgattag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10709993|gb|BF009717.1|BF009717
EST:     ACGTTTATGGCTCTGTTCCTCTCGTGGGTTCTTGGGATCCTTCCAAAGCT                         CTTTTCATGGAGCGGGAATCGATGTCAATGTGGGAACTTAGCTTTGTTGTC
genomic: ACGTTTATGGCTCTGTTCCTCTCGTGGGTTCTTGGGATCCTTCCAAAGCTgtaattttga ... ttggtgttagCTTTTCATGGAGCGGGAATCGATGTCAATGTGGGAACTTAGCTTTGTTGTC