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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGTCTCTCAAGATGGAGAATCACAAGCTCACAGGGGACCTTGTTCCTCACGTTTATGGCTCCGTTCCTCTCGTGGGTTCTTGGGATCCTTCCAAAGCTgtaattttgatccctacccttttcttcctttggttcgtgtgttactgggtgtgtcttctttttcgttgtttctcattgcttttttgggttttggtgttag

Basic information

species Glycine max
transcript GLYMA11G27410.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 1
CGTGTCTCTCAAGATGGAGAATCACAAGCTCACAGGGGACCTTGTTCCTCACGTTTATGGCTCCGTTCCTCTCGTGGGTTCTTGGGATCCTTCCAAAGCTgtaattttgatccctacccttttcttcctttggttcgtgtgttactgggtgtgtcttctttttcgttgtttctcattgcttttttgggttttggtgttag---------------------
||| || ||||| ||||| ||    ||| |   ||| || ||   |||||| || ||||||||  |||||||| | ||||| |||||||||||||||||||| |         ||      || ||  |||   |  |  ||   |   |  |  |  ||  |||    || | ||||| ||| |  ||  |  ||||                       
CGTTTCACTCAAAATGGAAAACTCTAAGGTTGAAGGAGAGCTCACTCCTCATGTCTATGGCTCTCTTCCTCTCATCGGTTCCTGGGATCCTTCCAAAGCTgtga-----gcatctgtttgatttttgttttatcttcttcgtctttccttccgattcattcatcgggaattttgattgcgtttctccgtcgtcttgttgtcaattaattcttctttaacag

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 1
CGTGTCTCTCAAGATGGAGAATCACAAGCTCACAGGGGACCTTGTTCCTCACGTTTATGGCTCCGTTCCTCTCGTGGGTTCTTGGGATCCTTCCAAAGCTgtaattttgatccctacccttttcttcctttggttcgtgtgttactgggtgtgtcttctttttcgttgtttctcattgcttttttgggttttggtgttag
 || ||  | || ||||||||| ||||||||| ||| || ||  | ||||||||||| |||||||| |||||||| || ||||||||| |||| ||||||||| | |    | |||     || |   |||| ||| || |  | || ||   |    |  ||   | | | | |||| |   |  | ||          
TGTATCCTTGAAAATGGAGAATTACAAGCTCAAAGGAGAACTCATCCCTCACGTTTACGGCTCCGTCCCTCTCGTCGGCTCTTGGGATTCTTCTAAAGCTgtattctcccgctctatatgcttgtctgtttgtttcttgcg--attgagttatttgcatggtttaatttgtttgattgttgaatatgattag--------