Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTGCAGCAATTGGCTTCAATAGCTGGCTCTTCTGGCCACCCTATTGGTCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatttattattacaaattatgttatgtgattgtgccttttctcagtaatgcttagtcacttcattttttgtttcgatcaacaaatgttagttat...

Basic information

species Glycine max
transcript GLYMA11G27190.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G27190.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g06730.t01 (Vitis vinifera), 5'ss of exon 2
TAGCTGCAGCAATTGGCTTCAATAGCTGGCTCTTCTGGCCACCCTATTGGTCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatttattattacaaattatgttatgtgattg-tgccttttctcagtaatgctta-gtcacttcattttttgtttcgatcaacaaatgttagttat
 ||  || || |||  ||   | |||||| |  | |||||||  || ||| |||| || || |||||||| |||||| | ||||||||||||||||| ||||||  | || ||| |  | | |  |  | | || ||| |      |    ||||     | |  | |  |  | ||   || |       | |||  ||  
CAGTGGCTGCCATTTACTCGGACAGCTGGTTGGTTTGGCCACTGTACTGGGCTGCCCAGGGGACAATGTTCTGGGCATTGTTTGTTCTTGGACATGACTGgtaatcacttaattttagccattatttctgtttggttgctaagaaatggtggtaaaataaaagaaagtaaaactcttacctctactttttcaagtttctt--

upper sequence: GLYMA11G27190.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 2
TAGCTGCAGCAATTGGCTTCAATAGCTGGCTCTTCTGGCCACCCTATTGGTCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatttattattacaaattatgttatgtgattgtgccttttctc-------------agtaatgcttag----tcacttcattttttgtttcgatcaacaaatgttagttat-----------------------------------------------------------------------
     ||||| ||   |||  | || ||| |  | ||||||| ||| ||| |||| || || |||||||| ||||| || ||||||||||||||||| ||||||  |  |  |  |||||  || || |  ||   || |   |                  || ||  |||        ||||| |   ||  ||  |  |||  |   || || |                                                                       
CTATAGCAGCTATATACTTGGACAGATGGGTGGTTTGGCCACTCTACTGGGCTGCCCAGGGAACAATGTTCTGGGCCCTGTTTGTTCTTGGACATGACTGgtaatcacatggtctttacactttctgcttggttgctgagaaatggtagtaaaagaaaagaaagcaaaacttgaaatcctacttcttcagtttctttcagtaacgtaatataattttactttgcttcttttgttgagtgcttttggcaatgaacttgaatgtcctttcttgatttttattttttgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411340|gb|EV281151.1|EV281151
EST:     TCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTG                         TGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCA
genomic: TCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatt ... cattgaacagTGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCA
EST: gi|192308420|gb|FK000916.1|FK000916
EST:     TCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTG                         TGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCA
genomic: TCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatt ... cattgaacagTGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCA
EST: gi|7286123|gb|AW598610.1|AW598610
EST:     TCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTG                         TGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCA
genomic: TCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGgtaactaatt ... cattgaacagTGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCA