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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGTGCCCCGATGGGTTTGCCAGAACTGCCGCAACCCTCTCTGCATCGTCGGCGCCGATTCTTACGCCGACAAATTCTTCAACGATCCTTCTCGCTCCGgtccgttagggtttcattattatcatttgttaatttaattaattgattgatacttgtttgttgatttggctgattttttgaggttgttgcattcgattga...

Basic information

species Glycine max
transcript GLYMA11G21490.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G21490.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G61710.3 (Arabidopsis thaliana), 5'ss of exon 1
AACGTGCCCCGATGGGTTTGCCAGAACTGCCGCAACCCTCTCTGCATCGTCGGCGCCGATTCTTACGCCGACAAATTCTTCAACGATCCTTCTCGCTCCGgtccgttagggtttcattattatcatttgttaattt--aattaattgattgatacttgtttgttgatttggctgattttttgaggttgttgcattcgattga
||  ||||   |||||| ||||| ||||| | | || | ||   ||||||||||| |||||| ||||||| ||| ||||||||||||||  |||  ||||||  |       ||| |   | || ||   |  |||  |||| || | ||| || |||  |  |  ||   |  |  |    ||  |       | ||||  
AATCTGCCGAAATGGGTCTGCCAAAACTGTCACCACTCCCTTACCATCGTCGGCGTCGATTCCTACGCCGGCAAGTTCTTCAACGATCCCCCTCCGTCCGgttagccccttcttcctccctctcgttcccttttttggaattcat-gtttggtaattgcgttcttgttcatcatagatagatagagttcaattgttgattt-

upper sequence: GLYMA11G21490.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv15s0046g00950.t01 (Vitis vinifera), 5'ss of exon 1
AACGTGCCCCGATGGGTTTGCCAGAACTGCCGCAACCCTCTCTGCATCGTCGGCGCCGATTCTTACGCCGACAAATTCTTCAACGATCCTTCTCGCTCCGgtccgttagggtttcattattatcatttgttaatttaattaattgattgatacttgtttgttgatttggctgattttttgaggttg--ttgcattcgattga--
|   ||||  ||||||| ||||||||||||||| ||   || ||||||||||||| ||| || ||||||||||| |||| |  |||  | |||||||| |||    |||||||||||  || | ||| ||       |||  ||  ||  || ||||   ||    | ||||   || ||    ||   ||  |  || | |  
ACTCTGCCGAGATGGGTCTGCCAGAACTGCCGCCACAACCTATGCATCGTCGGCGTCGACTCCTACGCCGACAAGTTCTACTCCGACTCCTCTCGCTCTGgt----tagggtttcatcttttttattcgtcttcagtatttttttttttgtatttgtggtttttcgttgctggaattgtggttctgaactgagtctgagttact
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588147|gb|AW703949.1|AW703949
EST:     CGGCGCCGATTCTTACGCCGACAAATTCTTCAACGATCCTTCTCGCTCCG                         GGATGCAAGGGTCGTCCATTCATGGTGCCAGCAGTGTGCTGAGTACGACTA
genomic: CGGCGCCGATTCTTACGCCGACAAATTCTTCAACGATCCTTCTCGCTCCGgtccgttagg ... atgagtgtagGGATGCAAGGGTCGTCCATTCATGGTGCCAGCAGTGTGCTGAGTACGACTA
EST: gi|11412642|gb|BF424653.1|BF424653
EST:     CGGCGCCGATTCTTACGCCGACAAATTCTTCAACGATCCTTCTCGCTCCG                         GGATGCAAGGGTCGTCCATTCATGGTGCCAGCAGTGTGCTGAGTACGACTA
genomic: CGGCGCCGATTCTTACGCCGACAAATTCTTCAACGATCCTTCTCGCTCCGgtccgttagg ... atgagtgtagGGATGCAAGGGTCGTCCATTCATGGTGCCAGCAGTGTGCTGAGTACGACTA