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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCCATCTCCGACGACCAATAGGAAGAAGAAACCACCGATTTTCAAGGAGGATTGGGTTCGACCCGATGGCCGCGGTTTTCACCAGTGCAGACCCGCGTgtaagcccccactggctttcaaattgaaccattctgtttatttcttctcaaactcagtatatgttttttatttttatttttatgaatctgttatttgtct...

Basic information

species Glycine max
transcript GLYMA11G20420.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G20420.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g02660.t01 (Vitis vinifera), 5'ss of exon 1
---TCGCCATCTCCGACGACCAATAGGAAGAAGAAACCACCGATTTTCAAGGAG--GATTGGGTTCGACCCGATGGCCGCGGTTTTCACCAGTGCAGACCCGCGTgtaagcccccactggctttcaaattgaaccattctgtttatttcttctcaaactcagtatatgttttttatttttatttttatgaatctgttatttgtct-
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TACTCGCCGTCTCCGGCTCCCAAAACCAAGCGGC-----CCATTTTCCAAGACGTCGATTGGGTACGACCCGACGGCCGCGGCTTCCATCAGTGCAGACCCGCCTgtgagtgatctc-agcctttttctcgttgtttccaatgtcttggtttccttgtgttgaacaaattgattgtttttatcgtttttattgtgtgttttgatga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298176888|gb|HO026895.1|HO026895
EST:     GGATTGGGTTCGACCCGATGGCCGCGGTTTTCACCAGTGCAGACCCGCGT                         TTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGT
genomic: GGATTGGGTTCGACCCGATGGCCGCGGTTTTCACCAGTGCAGACCCGCGTgtaagccccc ... tgacttgcagTTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGT
EST: gi|192299065|gb|FG990393.1|FG990393
EST:     GGATTGGGTTCGACCCGATGGCCGCGGTTTTCACCAGTGCAGACCCGCGT                         TTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGT
genomic: GGATTGGGTTCGACCCGATGGCCGCGGTTTTCACCAGTGCAGACCCGCGTgtaagccccc ... tgacttgcagTTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGT
EST: gi|192302684|gb|FG993704.1|FG993704
EST:     GGATTGGGTTCGACCCGATGGCCGCGGTTTTCACCAGTGCAGACCCGCGT                         TTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGT
genomic: GGATTGGGTTCGACCCGATGGCCGCGGTTTTCACCAGTGCAGACCCGCGTgtaagccccc ... tgacttgcagTTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGT