Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCACGAGGAAGTGGTGGACGGCTTGCCGGCGGATGACGACGGGTTTGTGTCGCGGCACTCGCATATGAAGTATGAACTCAGAGATTCGCCTGGTTTAGgtattgaatttttggagtttcgattttgaatgatttggtattttgattcaaattatggttgaagttgaaaatgtgttttcaattttcacgtgttactgtgtag

Basic information

species Glycine max
transcript GLYMA11G19420.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19420.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0061g01310.t01 (Vitis vinifera), 5'ss of exon 1
AGGCACGAGGAAGTGGTGGACGGCTTGCCG------GCGGATGACGACGGGTTTGTGTCGCGGCACTCGCATATGAAGTATGAACTCAGAGATTCGCCTGGTTTAGgtattgaatttttggagtttcgattttgaatgatttggtattttgattcaaattatggttgaagttgaa----aatgtgttttcaattt----tcacgtgttactgtgtag--------------
      || |||| ||| || |   ||||       |  || || || ||||||||| | |||||||||||||||||||||||||| || ||| | ||||||||||||      ||  || ||||   ||  |  || ||||| | |||| |    ||  |    |  | || |     ||| ||| |  |||||    |    |  |  |   |||              
------GATGAAGCGGTCGATGTACTGCCACAAACAGTTGACGATGATGGGTTTGTGGCTCGGCACTCGCATATGAAGTATGAACTTAGGGATACACCTGGTTTAGgtg--agtttcatgtagtt---atgcttgattatttgatgtttttagagtaagcagaactctaatttagcattaatttgtctataatttgaaatggtttactgatacttagacaaaatgtttcag