Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACAAGGTGAACACTGGGTTGCTTAAAATGTATAAGGCTGAGGTCTTGGAGAAGGTCCCCATCATGCAGCACTTTCTTTTCGGGTCGATTATTAAGTGgtatgtgtcttgctgtttttgctcgtgtttctaacatttgatttgattatatatctgcacttaaatgtgtttgccattgctgcattgtatcccattatgt...

Basic information

species Glycine max
transcript GLYMA11G19110.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19110.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g06050.t01 (Vitis vinifera), 5'ss of exon 1
GGAACAAGGTGAACACTGGGTTGCTTAAAATGTATAAGGCTGAGGTCTTGGAGAAGGTCCCCATCATGCAGCACTTTCTTTTCGGGTCGATTATTAAGTGgtatgtgtcttgctgtttttgc-tcgtgtttctaacatttgatttgattatatatctgcacttaaatgtgtttgccattgctgcattgtatcccattatgt---
||||||||||||| | |||| |||| ||||||||||| |||||||| ||||||||||| || || |||||||| || || || |||| | | || || |||||||    |  |||||  ||  |  |    |    || |||||     || | |      ||| | ||  |   || |  |||||  | |   |||  |    
GGAACAAGGTGAATAGTGGGATGCTCAAAATGTATAAAGCTGAGGTGTTGGAGAAGGTTCCAATTATGCAGCATTTCCTATTTGGGTGGCTCATCAAATGgtatga---tcactgttaatgagtaattagccctgtatgtgattcatgcatttttagttcattataagtcatccacact-ttgcatcatgtttaattgggaatc

upper sequence: GLYMA11G19110.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g06200.t01 (Vitis vinifera), 5'ss of exon 1
GGAACAAGGTGAACACTGGGTTGCTTAAAATGTATAAGGCTGAGGTCTTGGAGAAGGTCCCCATCATGCAGCACTTTCTTTTCGGGTCGATTATTAAGTGgtatgtgtcttgctgtttttgc-tcgtgtttctaacatttgatttgattatatatctgcacttaaatgtgtttgccattgctgcattgtatcccattatgt---
||||||| ||||| | |||| |||| ||||||||||| |||||||| ||||||||||| || || |||||||| || || || |||| | | || || |||||||    |  |||||  ||  |  |    |    || |||||     || | |      ||| | ||  |   || |  |||||  | |   |||  |    
GGAACAAAGTGAATAGTGGGATGCTCAAAATGTATAAAGCTGAGGTGTTGGAGAAGGTTCCAATTATGCAGCATTTCCTATTTGGGTGGCTCATCAAATGgtatga---tcactgttaatgagtaattagccctgtatgtgattcatgcatttttagttcattataagtcatccacact-ttgcatcatgtttaattgggaatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207741208|gb|GD715356.1|GD715356
EST:     GAGAAGGTCCCCATCATGCAGCACTTTCTTTTCGGGTCGATTATTAAGTG                         GGAATAGTGCTTGGAGTCTTCTGCCGGTTTTCCTATGAGGACGAGCTAT
genomic: GAGAAGGTCCCCATCATGCAGCACTTTCTTTTCGGGTCGATTATTAAGTGgtatgtgtct ... tttctaccagGGAATAGTGCTTGGAGTCTTCTGCCGGTTTTCCTATGAGGACGAGCTAT