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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGACTCCAGGCTCTGCTTCTCTCAGGATCGCTACATCTTCCACATACTCCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagttcttcgtctttttcttcttaatcgtaatcttaatttcgttgttatacgatccgattctctttcagttaaaatgtaggatctactgaagagtctt...

Basic information

species Glycine max
transcript GLYMA11G18760.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G18760.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os10g06540.1 (Oryza sativa), 5'ss of exon 1
TCCGACTCCAGGCTCTGCTTCTCTCAGGATCGCTACATCTTCCACATACTCCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagttcttcgtctttttcttcttaatcgtaatct--taatttcgttgttatacgatccgattctctttcagttaaaatgtaggatctactgaagagtctt
| ||        | || | |||  || |  | |  |  |   | |     |    |||||||| |||||| | |||| ||||||||||||||||||||||||     ||   |||| | |||  || |  || |||  |||| |   || | || |    |  |    |  | |       |    |     | |   ||||
TTCGCGCAGGACCGCTACATCTTCCACGTCCTCCGCTCCCCTCCCCCCGCCGCCGCCGATGGCCTCACCTTCCTCTGCATGGCCAACGACACCTTCGGAAgtacaaactc--tcttatacttactagtattactctactaatctatatgatctatggataggataagatggattcgttcattcatcttcttagtatgttctt

upper sequence: GLYMA11G18760.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G149843_T02 (Zea mays), 5'ss of exon 1
TCCGACTCCAGGCTCTGCTTCTCTCAGGATCGCTACATCTTCCACATACTCCGATCCGATG------GCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagt--tcttcgtctttttcttcttaatcgtaatcttaatttcgttgttatacgatccgattctctttcagtta--aaatgtaggatctactgaagagtctt
      |||||||| |||||| | ||||| || |||||||||||| | ||||||||||| |      ||||||||| | ||||||||||||||||||||||||||||| | |   ||||||   | ||   |   ||||   ||   |  | |  |   |         | | |  | | ||   | ||   |  || | |  |      
------TCCAGGCTGTGCTTCGCGCAGGACCGGTACATCTTCCACGTCCTCCGATCCGACGCCGCCGGCATCACCTTCCTCTGTATGGCCAACGACACCTTCGGAAgtaactacccttcgttcctctcaattcgttcgttcgctcgctcgcttgctcgcatacataagatttttagctgctactgattgctagtactccagttggc----

upper sequence: GLYMA11G18760.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0080g00800.t01 (Vitis vinifera), 5'ss of exon 1
TCCGACTCCAGGCTCTGCTTCTCTCAGGATCGCTACATCTTCCACATACTCCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagt--tcttcgtctttttcttcttaatcgtaatcttaatttcgttgttatacgatccgattctctttcagttaaaatgtaggatctactgaagagtctt--
 |||| ||||||||||| ||||| |||||||||||||| || ||||||||| || |||||||  || | | | | || ||||||||||||||||||||||||  ||  || |||  | ||  || |   |  |||| ||   ||  || |||||  ||     | |  ||| |||     || |      |    |||      
GCCGATTCCAGGCTCTGTTTCTCGCAGGATCGCTACATATTTCACATACTCAGAGCCGATGGACTCGCGTTCCTTTGCATGGCCAACGACACCTTCGGAAgtctgtagtcatcgcttcttcgttttattttttaatttttggtt--ttattata--atttttgttttgttcggttttttggttgatctggcccgggagctaggg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197870|gb|HO039409.1|HO039409
EST:     CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAA                         GGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
genomic: CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagttctt ... ctttatccagGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
EST: gi|19270491|gb|BM886747.1|BM886747
EST:     CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAA                         GGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
genomic: CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagttctt ... ctttatccagGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
EST: gi|213596206|gb|DB960166.1|DB960166
EST:     CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAA                         GGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
genomic: CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagttctt ... ctttatccagGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
EST: gi|27808898|gb|CB063320.1|CB063320
EST:     CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAA                         GGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
genomic: CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagttctt ... ctttatccagGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
EST: gi|209707880|gb|BW662086.1|BW662086
EST:     CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAA                         GGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
genomic: CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagttctt ... ctttatccagGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
EST: gi|254321070|gb|GR827519.1|GR827519
EST:     CGACACCTTCGGAA                         GGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
genomic: CGACACCTTCGGAAgtgagttctt ... ctttatccagGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
EST: gi|5057629|gb|AI736105.1|AI736105
EST:     CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAA                         GGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
genomic: CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagttctt ... ctttatccagGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
EST: gi|16348943|gb|BI974538.1|BI974538
EST:     CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAA                         GGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
genomic: CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagttctt ... ctttatccagGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
EST: gi|24136750|gb|BU927260.1|BU927260
EST:     CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAA                         GGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
genomic: CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagttctt ... ctttatccagGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
EST: gi|7286109|gb|AW598596.1|AW598596
EST:     CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAA                         GGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
genomic: CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagttctt ... ctttatccagGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
EST: gi|192321054|gb|FK013528.1|FK013528
EST:     CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAA                         GGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
genomic: CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagttctt ... ctttatccagGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
EST: gi|11413060|gb|BF425080.1|BF425080
EST:     CGACACCTTCGGAA                         GGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
genomic: CGACACCTTCGGAAgtgagttctt ... ctttatccagGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
EST: gi|151394906|gb|EV264777.1|EV264777
EST:     CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAA                         GGAGAATCCCTTTCTCGTACTTGGAAGATATCCCAATGAGGTTTACGAAGA
genomic: CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagttctt ... ctttatccagGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
EST: gi|57575163|gb|CX548138.1|CX548138
EST:     CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAA                         GGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
genomic: CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagttctt ... ctttatccagGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
EST: gi|15662923|gb|BI700286.1|BI700286
EST:     CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAA                         GGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA
genomic: CCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACCTTCGGAAgtgagttctt ... ctttatccagGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGA