1 5' 3' | 2 5' 3' |
AGCACTTAAAGAAAAGACAGAGGAAATTGAAAGTCCTTCTCAACAATCTTCACCTGAAGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAGgtgcccatttcttttttctcgtctattttttcttaactaggagtgtaaggtagctcaaagattccaactttataaatcaaaggtttcttgttttgggggt...
species | Glycine max |
transcript | GLYMA11G18410.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACCTGAAGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAG ATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTGAACAACCGAAATCAEST: gi|209727232|gb|BW655243.1|BW655243
genomic: CACCTGAAGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAGgtgcccattt ... tcttttgcagATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTGAACAACAGAAATCA
EST: CACCTGAAGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAG ATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTGAACAACAGAAATCAEST: gi|209725059|gb|BW659781.1|BW659781
genomic: CACCTGAAGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAGgtgcccattt ... tcttttgcagATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTGAACAACAGAAATCA
EST: CACCTGAAGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAG ATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTGAACAACAGAAATCAEST: gi|192320458|gb|FK012316.1|FK012316
genomic: CACCTGAAGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAGgtgcccattt ... tcttttgcagATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTGAACAACAGAAATCA
EST: CACCTGAAGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAG ATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTGAACAACCGAAATCA
genomic: CACCTGAAGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAGgtgcccattt ... tcttttgcagATTTTCAGCTCAAAAGAGGAAGGAAAGGATAATTCTGAACAACAGAAATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCACTTAAAGAAAAGACAGAGGAAATTGAAAGTCCTTCTCAACAATCTTCACCTGAAGAAGTTACAAAGAAGTATGGCCTTGAAGCTGGTCTTTGGCAGgtgcccatttcttttttctcgtctattttttcttaactaggagtgtaaggtagctcaaagattccaactttataaatcaaaggtttcttgttttgggggt
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggggg