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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAGATGGAAAGAGAGTGGTGATCCTAGGAGGTGGCGTTGCGGGATCCGTCGTGGCTAAATCTCTTCAATTCCATGCCCATGTCACACTCGTTGATCCgtaatcaaaacattctctgctacttttttattttttatttttatgtttaattattcgagcagaatttttttaatttggatttggctaattgagacaccca...

Basic information

species Glycine max
transcript GLYMA11G18330.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G18330.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0009g00680.t01 (Vitis vinifera), 5'ss of exon 1
---AAAAAGATGGAAAGAGAGTGGTGATCCTAGGAGGTGGCGTTGCGGGATCCGTCGTGGCTAAATCTCTTCAATTCCATGCCCATGTCACACTCGTTGATCCgtaatcaaaacattctctgctacttttttattttttatttttatgtttaatt--attcgagcagaatttttttaatttggatttggctaattgagacaccca
    |||  || ||| |   ||||||||    ||||| || ||||| || ||  || |||||||||||||||||||||||||  |||| || ||  ||||||||| |  |   | ||||||    ||  ||| |||| ||||  |   |||  ||  |  | | ||  | |      |     ||     ||  |  | ||||| 
ACTTAAAGAATAGAAGGGTGGTGGTGATT---GGAGGGGGTGTTGCAGGCTCTCTCCTGGCTAAATCTCTTCAATTCCATGCTGATGTTACCCTTCTTGATCCgtgagta--tctttctctttctctcctttgttttctattcattcttttccttcaaaacaaacacgagtgagcccagaacaatcaatttatgtagggcaccct