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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTAGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgactgtgcatcgtcactctacgctaattgcttagttgaagccgttgatggtttcagatttctaattttctttttaatttcag

Basic information

species Glycine max
transcript GLYMA11G15230.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192305205|gb|FG993957.1|FG993957
EST:     AGAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|192308707|gb|FG999760.1|FG999760
EST:     AGAGCCGGC-TCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|192334633|gb|FK025866.1|FK025866
EST:     GAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: GAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|151412074|gb|EV281886.1|EV281886
EST:     AGAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|209728121|gb|BW655356.1|BW655356
EST:     GCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: GCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|192308708|gb|FG999761.1|FG999761
EST:     CCGGC-TCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: CCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|192317680|gb|FK009020.1|FK009020
EST:     TCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: TCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|193411707|gb|FK378632.1|FK378632
EST:     AGAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAAG
genomic: AGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCT-AAAG
EST: gi|192317679|gb|FK009019.1|FK009019
EST:     AGAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|213613664|gb|DB963324.1|DB963324
EST:     AGAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|213614607|gb|DB972847.1|DB972847
EST:     AGAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|192332926|gb|FK025023.1|FK025023
EST:     AGAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|192329617|gb|FK023695.1|FK023695
EST:     CTAGAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: CTAGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|151405988|gb|EV275803.1|EV275803
EST:     AGAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|151403678|gb|EV273488.1|EV273488
EST:     AGAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
EST: gi|151402792|gb|EV272605.1|EV272605
EST:     AGAGCCGGCTTCTCCCTCTGCGCAG                         GAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG
genomic: AGAGCCGGCTTCTCCCTCTGCGCAGgtttgtgact ... ttaatttcagGAATTGGGAACATTCGACAGGTAGAGTTTCTTCAATGGCTCCTAAAG