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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAGAGTTAACAATCTCTTCTCTTCGCTCCTGCACTTGTTGTTTCTTTGCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatacacgcacgccgcctctctctctttctcttattcttctgatttgttttctcgcaaaataaaaataaaaattaaggccctgtttggcgtggattctccgcgatgttctgattggcctttcctcgcag

Basic information

species Glycine max
transcript GLYMA11G14980.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207735848|gb|GD709333.1|GD709333
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|298167627|gb|HO012890.1|HO012890
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|298194743|gb|HO043215.1|HO043215
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|213587556|gb|DB969697.1|DB969697
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|14011884|gb|BG726806.1|BG726806
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|298182929|gb|HO028142.1|HO028142
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|208282209|gb|GE074175.1|GE074175
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|298167833|gb|HO013096.1|HO013096
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|8286011|gb|BE023499.1|BE023499
EST:     CTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: CTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|298183716|gb|HO028929.1|HO028929
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|207769862|gb|GD742176.1|GD742176
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|193465866|gb|FK433779.1|FK433779
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCCCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|298167168|gb|HO010607.1|HO010607
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|16104747|gb|BI892487.1|BI892487
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|24205272|gb|BU964525.1|BU964525
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|7284473|gb|AW597063.1|AW597063
EST:     GGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
EST: gi|213603235|gb|DB970406.1|DB970406
EST:     GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAG                         ATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA
genomic: GCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatac ... ttcctcgcagATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAAGAGTTAACAATCTCTTCTCTTCGCTCCTGCACTTGTTGTTTCTTTGCCCTTCATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGgtacgcatacacgcacgccgcctctctctctttctcttattcttctgatttgttttctcgcaaaataaaaataaaaattaaggccctgtttggcgtggattctccgcgatgttctgattggcctttcctcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA