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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTTTTGGAAGTTCAAAAGGGTGGGAGAGATACAAAGTGTTCATTGATTTAAACCCTTGCTAGAACCCTAATTGgtaaacctatatctgttctttggctatcttttatttttcccatctttagtttctctttcaaatattcattctctatatcttcaaatttaatgtattagatacacag

Basic information

species Glycine max
transcript GLYMA11G14040.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205960|gb|BU965213.1|BU965213
EST:     GAGAGATACAAAGTGTTCATTGATTTAAACCCTTGCTAGAACCCTAATTG                         GTGGTTTTTGATTTGGTGAAAGGTAAAGCAAGCAAATAAGGGCTCAATGAA
genomic: GAGAGATACAAAGTGTTCATTGATTTAAACCCTTGCTAGAACCCTAATTGgtaaacctat ... agatacacagGTGGTTTTTGATTTGGTGAAAGGTAAAGCAAGCAAATAAGGGCTCAATGAA
EST: gi|24205720|gb|BU964973.1|BU964973
EST:     GAGAGATACAAAGTGTTCATTGATTTAAACCCTTGCTAGAACCCTAATTG                         GTGGTTTTTGATTTGGTGAAAGGTAAAGCAAGCAAATAAGGGCTCAATGAA
genomic: GAGAGATACAAAGTGTTCATTGATTTAAACCCTTGCTAGAACCCTAATTGgtaaacctat ... agatacacagGTGGTTTTTGATTTGGTGAAAGGTAAAGCAAGCAAATAAGGGCTCAATGAA