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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACGAACACTGTAAGCATGAACAAGCGCCAAGAAGATTTGCGCAACATAGCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGgtaaccctcaattcctctcttttttctctttttcagatcgagggttattattgcttcatcgaggttaattttatccattttgtattttctagctgattca...

Basic information

species Glycine max
transcript GLYMA11G13330.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208180076|gb|GD975423.1|GD975423
EST:     GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGG                         GTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGT
genomic: GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGgtaaccctca ... ttctatcaagGTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGT
EST: gi|193393761|gb|FK359838.1|FK359838
EST:     TACTACCCTCGACTCCAGATTCAATCAGACCCTCAAGAAAATGTTCAAGG                         GTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGANCCGTAGG
genomic: TACTACCCTCGACTCCAGATTCAATCAGACCCTCA-GAAA-TGTTCAAGGgtaaccctca ... ttctatcaagGTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGG
EST: gi|298167430|gb|HO012693.1|HO012693
EST:     GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGG                         GTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGT
genomic: GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGgtaaccctca ... ttctatcaagGTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGT
EST: gi|192333733|gb|FK025806.1|FK025806
EST:     GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGG                         GTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGT
genomic: GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGgtaaccctca ... ttctatcaagGTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGT
EST: gi|31561508|gb|CD487346.1|CD487346
EST:     GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGG                         GTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGT
genomic: GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGgtaaccctca ... ttctatcaagGTTACTCAAAGGTCGAAGCATACCCGGTAAAATATTATTGAGCCGTAGGGT
EST: gi|193353876|gb|FK321632.1|FK321632
EST:     GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGG                         GTTACTCAAAGGTCGAAGCATACCCGGTAAAAATATTATTGAGCCGTAGGG
genomic: GCTACTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGgtaaccctca ... ttctatcaagGTTACTCAAAGGTCGAAGCATACCCGGTAAAA-TATTATTGAGCCGTAGGG