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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGTGACAAAGTAACAAATTTCAGCATTAGCTTAGAAAATGGAGTTCGTTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcattttttagggtttcgcccactctttatttccaatttcatttctctatcgtttacaccgttgtgtataatctctctattctgcaaaaaagac...

Basic information

species Glycine max
transcript GLYMA11G13100.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395351|gb|EV265222.1|EV265222
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG                         CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: gi|31561814|gb|CD487652.1|CD487652
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG                         CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: gi|298196651|gb|HO041394.1|HO041394
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG                         CCTGCTCTGCCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: gi|151399130|gb|EV269001.1|EV269001
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG                         CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: gi|298188836|gb|HO035529.1|HO035529
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG                         CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: gi|208153284|gb|GD948765.1|GD948765
EST:     TCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTTG                         CCTGCTCTGTCGATTGGCA
genomic: TCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTT-Ggtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCA
EST: gi|6666082|gb|AW277541.1|AW277541
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG                         CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: gi|192298008|gb|FG993242.1|FG993242
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG                         CCTACTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: gi|298199338|gb|HO042701.1|HO042701
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG                         CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTGGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: gi|18039874|gb|BM308168.1|BM308168
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG                         CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: gi|213596494|gb|DB962054.1|DB962054
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG                         CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: gi|208082193|gb|GD882999.1|GD882999
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG                         CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTG
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTG
EST: gi|192295265|gb|FG986984.1|FG986984
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG                         CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: gi|19052856|gb|BM731523.1|BM731523
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG                         CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: gi|192298714|gb|FG988595.1|FG988595
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG                         CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: gi|151400466|gb|EV270280.1|EV270280
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTG                         CCTGCTCTGTCGATTGGCAATGTGGGACAGCTAGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
EST: gi|298174081|gb|HO017417.1|HO017417
EST:     TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACCTTGATTTTG                         CCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT
genomic: TTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcat ... gtgttttcagCCTGCTCTGTCGATTGGCAATGTGGGGCAGCTAGTTGCAGATCTTTTGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTGTGACAAAGTAACAAATTTCAGCATTAGCTTAGAAAATGGAGTTCGTTCCTGAAGAAGGCAAGCACCTTCACGAGGATTGCTCCACTTTGATTTTGgtgtgttcattttttagggtttcgcccactctttatttccaatttcatttctctatcgtttacaccgttgtgtataatctctctattctgcaaaaaagac

- - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaaaa