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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTTTGGTGTTAGGGTTTTGGATTGAAATTTGAAGAGTAACAATGGAAGATACGCCAACACCTTCAACTGCTTTGACCTACCTTAATCCTTCCTACTGgtaatccctattcactgatcaaagcttctcaacaaattttgtaaatttctcaacaatttaatttaattttcctttcgttggtttcag

Basic information

species Glycine max
transcript GLYMA11G12910.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298182183|gb|HO026358.1|HO026358
EST:     GATACGCCAACACCTTCAACTGCTTTGACCTACCTTAATCCTTCCTACTG                         GGACGAGAGGTTCTCGAAGGAGGAGCAATACGAGTGGTTCAAGGATTATTC
genomic: GATACGCCAACACCTTCAACTGCTTTGACCTACCTTAATCCTTCCTACTGgtaatcccta ... ttggtttcagGGACGAGAGGTTCTCGAAGGAGGAGCAATACGAGTGGTTCAAGGATTATTC
EST: gi|298173135|gb|HO020119.1|HO020119
EST:     GATACGCCAACACCTTCAACTGCTTTGACCTACCTTAATCCTTCCTACTG                         GGACGAGAGGTTCTCGAAGGAGGAGCAATACGAGTGGTTCAAGGATTATTC
genomic: GATACGCCAACACCTTCAACTGCTTTGACCTACCTTAATCCTTCCTACTGgtaatcccta ... ttggtttcagGGACGAGAGGTTCTCGAAGGAGGAGCAATACGAGTGGTTCAAGGATTATTC
EST: gi|7145881|gb|AW507803.1|AW507803
EST:     GATACGCCAACACCTTCAACTGCTTTGACCTACCTTAATCCTTCCTACTG                         GGACGAGAGGTTCTCGAAGGAGGAGCAATACGAGTGGTTCAAGGATTATTC
genomic: GATACGCCAACACCTTCAACTGCTTTGACCTACCTTAATCCTTCCTACTGgtaatcccta ... ttggtttcagGGACGAGAGGTTCTCGAAGGAGGAGCAATACGAGTGGTTCAAGGATTATTC